KEGG   Arabidopsis lyrata (lyrate rockcress): 9301492
Entry
9301492           CDS       T01578                                 
Name
(RefSeq) putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3
  KO
K15505  DNA repair protein RAD5 [EC:5.6.2.-]
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:aly00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aly03400]
    9301492
DNA repair and recombination proteins [BR:aly03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    9301492
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C HIRAN zf-C3HC4 DEAD zf-C3HC4_3 ResIII zf-RING_UBOX zf-C3HC4_2 zf-RING_2 zf-RING_5 Prok-RING_4 zf-C3HC4_4 RING_XB3-XBAT31 AAA_34
Other DBs
NCBI-GeneID: 9301492
NCBI-ProteinID: XP_002865418
UniProt: D7MP52
LinkDB
Position
Unknown
AA seq 1305 aa
MAIVDDSEKLITESEAVSSSVDGKIVADTPDFIDESSLVVRTTTGVRISPHFVEQSLVDS
DGSKSDFSGVVAPAVTLPAKDEVISDGFASVNKEIVESDSFRADSLETRVKEEPDLDVEN
REEAMIIDSIGNSVVETLPSASGDDCNVQVEVVEPELLVENLVVVKEDEVFVDSIAKSVV
DKEEEMIVDSIENSVVEIVSSASGCDCNVKVVVVEPELCVETLVSVKEEDMSVDSIMESV
VETVSRGSDNKCVDVKVKEEPDLDTKLEEDSVVLEKKDEVIKVQEDQPSEINGLLQENKK
VDQEIVLFSSGDSDGASAKRRKIEMESSVPIGVQSCILAPTPLRVVKPEKLDTPEVIDLE
SEKSYTHVKMEPVEEIKAEAVKMSSQVKEMKFSREQKPVFVKKEPVEAKKVKVEDGDFPV
EKDWYLVGRSLVTATSTSKGRKLEDNEIVNFTFSSVANWKVPNIVRFSTKRCGEIGRLPM
EWSNWAVSLLRSGKVKMLGRCVAAPPFLTMMQEIMLYVSFYIHISIFTDVSKSTWRIGSS
PNIESTLHPLLQLFKHLTIKPYQKAEFTPEELNSRKRSLNLEDDFDERAALLAIAKRRKG
CQQSLEQNKDEEEAPDSYMNRVVGAADSYNLEEMEAPSTLTCNLRPYQKQALYWMSESEK
GIDVEKAAETLHPCWEAYRICDERAPSIYLNIFSGEATIQFPTATQMARGGILADAMGLG
KTVMTIALILARPGRGNPGNEDGLAADVNADKRKRKESHTALTIVKAKGGTLIICPMALL
SQWKDELETHSKPDTVSVLVYYGGDRTHDAKAIASHDVVLTTYGVLTSAYKQDMANSIFH
RIDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPLQNKLEDLYSLLCFLHVEP
WCNWAWWSKLIQKPYENGDSRGLKLIKAILRPLMLRRTKETRDKEGSLILELPPTDIQVI
ECEQSEAERDFYTALFKRSKVQFDQFVAQGKVLHNYANILELLLRLRQCCNHPFLVMSRA
DSQQYADLDSLARRFLDNNPDSVSQNAPSRAYIEEVIQDLRDGNSKECPICLESADDPIL
TPCAHRMCRECLLTSWRSPSCGLCPICRTILKRTELISCPTDSIFRVDVVKNWKESSKVS
ELLKCLEKIQKSGSGEKSIVFSQWTSFLDLLEIPLRRKGFEFLRFDGKLAQKGREKVLKE
FNETKQKTILLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVR
RFIVKDTVEERMQQVQARKQRMIAGALTDEEVRSARLEELKMLFR
NT seq 3918 nt   +upstreamnt  +downstreamnt
atggccatcgttgatgactctgagaagctgataaccgaatccgaagctgtttcgagttcc
gttgatggtaagatcgttgcagatactcccgactttattgacgaatcctctctagtcgtc
agaacaaccactggagtccgaatctcacctcatttcgtagagcaaagccttgttgactcc
gatggatctaagtcggatttttcgggcgttgttgcccctgcggttacgcttccggcgaaa
gacgaggtaattagtgatggttttgcttctgtgaataaagagattgtagaatctgattca
tttagggcggatagtttagagactcgtgttaaggaggaacctgatttggatgttgagaat
cgcgaagaagcgatgattattgattcgataggaaattctgtggttgaaactcttccaagt
gcttcgggtgatgattgtaatgttcaggtagaggtagtggaacctgaattgcttgttgag
aatctggtggttgttaaagaagacgaagtgttcgttgattcgatagcgaaatctgttgtt
gataaagaagaagagatgatagttgattctatagaaaattctgtggttgaaattgtttca
agtgcttcaggttgtgattgtaatgtgaaggtagtggtagtggaacctgaattgtgtgtt
gagactctggtgagtgttaaagaagaagacatgagtgttgattctataatggaatctgtg
gttgaaacggtttccagaggttcagacaacaagtgtgttgatgtcaaggtcaaggaagaa
cctgatttagatacaaagttggaagaagattctgttgtgctcgagaagaaggatgaggta
atcaaagtccaggaagaccagccaagtgagattaatggattgttgcaagaaaataagaaa
gtagaccaagaaattgttctcttttcgtctggtgattcggatggtgcatcagctaaaaga
aggaaaatagagatggaatcatctgtaccaatcggtgtccaaagctgtatcctggcgccg
acgccccttcgagttgtgaaaccggagaagttggatacccctgaagttattgatctggaa
tctgagaagagttatactcatgtgaagatggaaccggttgaggaaataaaggcggaagct
gtgaagatgagttctcaagtgaaagaaatgaaatttagccgtgagcagaaaccggtattt
gtgaagaaggaaccggttgaagcaaaaaaggtgaaagtggaagatggagattttccggtg
gagaaagattggtatttggttgggaggtcacttgttactgctacttctacaagtaaagga
aggaaattagaagataacgagattgtgaatttcactttttcctctgttgccaattggaaa
gtccctaacattgttcgtttctctaccaaaagatgtggcgagattggtagacttcctatg
gagtggtctaattgggctgtgagtcttttaagatctggtaaggtcaaaatgttaggcaga
tgtgtagcggcgccaccgtttcttacaatgatgcaagaaattatgctatatgtcagtttt
tacattcacatctcgatattcactgatgttagcaaatccacttggcgaattggttcttcc
ccaaacatcgagtccacgcttcatcctcttctccagcttttcaaacacttgacaatcaaa
ccttatcaaaaggcggagtttactcctgaggaacttaactctcgtaaacgatcactgaat
ttggaggatgactttgatgaaagagcagcattgttggccatagcaaaaagaagaaaaggt
tgtcaacagtctctggagcagaacaaagatgaagaagaggctcctgactcatatatgaat
cgggttgtcggcgctgcagattcttataacctcgaggaaatggaagctccaagtacacta
acgtgtaacctgagaccgtaccagaaacaagctctctactggatgtcagaatctgagaaa
ggaattgatgttgaaaaggcagctgaaactctacatccatgttgggaggcttatcgaatc
tgtgacgagagagcaccttcaatttatttgaacatctttagtggtgaagcaacaatccag
tttccaacagcaacacagatggcaagaggcggaatattggcagatgccatgggacttgga
aaaactgtgatgacaattgcactaatacttgcacggcctggccgaggtaacccaggaaat
gaagatggcttggcggcagatgttaatgcagataaacgcaagaggaaggagagtcatacc
gcactaacgattgtgaaggcaaaaggaggcactcttattatttgtcccatggcattgtta
agccaatggaaggacgagcttgagactcattcaaagcctgacactgtgtctgtgttagtt
tactatggaggggataggacacatgacgcgaaagcaatagcgagtcatgatgtggttttg
acaacttatggtgtcttaacctcagcttacaagcaggatatggcaaacagtattttccac
aggattgattggtataggattgttcttgatgaagctcacacgatcaaatcgtggaaaact
caagctgctaaagctacatttgagttgtcctcacattgcagatggtgtctaactgggact
cccttacaaaacaagcttgaagatctttacagtcttctatgcttcctgcatgtcgaacca
tggtgcaattgggcttggtggagtaagttgatacagaagccttatgaaaatggtgattca
cgaggactgaagctgatcaaggcgattttgaggccattgatgctgagaagaacaaaggaa
acaagggacaaagaaggaagtctaattcttgaacttcctccaactgatatccaagtcatt
gaatgtgaacaatccgaagcagaacgtgacttctatactgcccttttcaagagatccaaa
gttcaatttgaccagtttgtggcacaaggaaaagttctccacaactatgcaaacatcctc
gagctcctcctccgtctacgccaatgttgtaaccacccttttctagttatgagccgagca
gattcacaacagtacgctgacttagatagccttgcaaggaggtttcttgataacaaccct
gactctgtttcccaaaatgcgccttctcgggcatatatcgaggaagttatccaggattta
cgtgatggaaatagcaaagaatgtccaatatgtctggagtctgcagatgatcccattctc
acaccttgtgctcacagaatgtgccgggaatgtctccttactagctggcgctccccgtct
tgtggtctatgcccaatctgcaggacaatcctgaagagaaccgagctgatctcatgcccg
acagatagtatattccgtgttgatgtggtaaagaactggaaggagtcttcaaaagtttca
gagctgctcaagtgcttagagaagatccaaaaatctggttcaggtgagaagagcattgtc
tttagccagtggacttcatttttggatcttttggagattccattgcgaagaaaaggattc
gagtttcttagattcgatgggaagctggctcaaaaaggaagagaaaaggtcttgaaagag
ttcaatgaaaccaaacagaaaacgattctgcttatgtctctgaaagctggaggagttggt
ctgaatctaactgcagcttcaagtgtcttcttaatggatccatggtggaatccggcggta
gaagagcaagcgatcatgagaattcatcgaatagggcagaaacgaacagtatttgtcaga
agattcattgtcaaggatacagtggaggaacggatgcagcaagttcaggcaaggaagcag
aggatgattgccggagctttgaccgatgaagaagtccggtcggcaagacttgaggagctc
aaaatgttgttccgataa

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