Arabidopsis lyrata (lyrate rockcress): 9301759
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Entry
9301759 CDS
T01578
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9301759
09123 Folding, sorting and degradation
03018 RNA degradation
9301759
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9301759
03041 Spliceosome [BR:
aly03041
]
9301759
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
9301759
mRNA degradation factors
5'-3' decay
Lsm complex
9301759
Spliceosome [BR:
aly03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
9301759
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF7452
SM-ATX
Swm2
Motif
Other DBs
NCBI-GeneID:
9301759
NCBI-ProteinID:
XP_002863925
UniProt:
D7MMN2
LinkDB
All DBs
Position
Unknown
AA seq
88 aa
AA seq
DB search
MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR
RVTKLDQILLNGNNIAILVPGGSPEDGE
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcaatccttcgcagcttcttccatcagagctaatcgataggtgcataggatcg
aagatatgggtgattatgaaaggagataaggagcttgttggtattcttaaaggcttcgat
gtttatgtcaacatggttcttgaagatgtcaccgaatatgagatcacagctgaaggaaga
cgggtcacaaagcttgatcagattctactcaatggcaacaacatcgccattttggtgcct
ggtgggtctcccgaagatggagaatga
DBGET
integrated database retrieval system