KEGG   Arabidopsis lyrata (lyrate rockcress): 9301759
Entry
9301759           CDS       T01578                                 
Name
(RefSeq) sm-like protein LSM5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018  RNA degradation
aly03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    9301759
  09123 Folding, sorting and degradation
   03018 RNA degradation
    9301759
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aly03019]
    9301759
   03041 Spliceosome [BR:aly03041]
    9301759
Messenger RNA biogenesis [BR:aly03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     9301759
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     9301759
Spliceosome [BR:aly03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    9301759
SSDB
Motif
Pfam: LSM DUF7452 SM-ATX Swm2
Other DBs
NCBI-GeneID: 9301759
NCBI-ProteinID: XP_002863925
UniProt: D7MMN2
LinkDB
Position
Unknown
AA seq 88 aa
MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR
RVTKLDQILLNGNNIAILVPGGSPEDGE
NT seq 267 nt   +upstreamnt  +downstreamnt
atggcgagcaatccttcgcagcttcttccatcagagctaatcgataggtgcataggatcg
aagatatgggtgattatgaaaggagataaggagcttgttggtattcttaaaggcttcgat
gtttatgtcaacatggttcttgaagatgtcaccgaatatgagatcacagctgaaggaaga
cgggtcacaaagcttgatcagattctactcaatggcaacaacatcgccattttggtgcct
ggtgggtctcccgaagatggagaatga

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