Arabidopsis lyrata (lyrate rockcress): 9301763
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Entry
9301763 CDS
T01578
Name
(RefSeq) probable pectate lyase 20
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly00040
Pentose and glucuronate interconversions
aly01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
9301763
Enzymes [BR:
aly01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
9301763
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Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
9301763
NCBI-ProteinID:
XP_020869482
LinkDB
All DBs
Position
Unknown
AA seq
372 aa
AA seq
DB search
MVDMSIRNSTERRKLGYFSCSTGNPIDDCWRCDRRWQSRRKALANCAIGFGRNAIGGRDG
RYYVVSDPNDDNPVNPKPGTLRHAVIQEEPLWIVFKRDMVITLKEELIMNSFKTIDGRGV
NVHIANGACITIQFVTNIIIHGIHIHDCRPTGNAMVRSSPSHYGWRTMADGDGISIFGSS
HIWIDHNSLSNCADGLIDAVMASTAITISNNYFTHHNEVMLLGHSDTYTRDKVMQVTIAY
NHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRYLAPRNRFAKEV
TKRDYAGQWQWRHWNWRSEGDLFLNGAFFTRSGSGLGASYARASSLAAKSSSLVGVITYN
AGALNCRGGRRC
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atggtggacatgagcattcgaaacagcacagaacgaagaaaattaggatacttctcatgt
tcaaccggaaatccaatcgacgactgttggcgttgtgatcggagatggcaatctcggcga
aaagctttagccaattgcgcaatcggattcggtcgaaacgcaatcggaggccgagacggt
cgttactacgtcgtaagcgacccaaacgacgataacccggttaaccctaaaccgggaaca
ttacgtcacgcagtaattcaagaagaaccactatggattgtctttaaacgtgacatggtc
ataacattaaaagaagaactaatcatgaacagtttcaaaacaatcgatggtcgtggtgtg
aatgttcacatagctaatggtgcatgtatcacgattcagttcgtgactaacattatcatt
catgggattcatattcatgattgtagaccaactggtaacgctatggttagaagctctcct
tcacattatggttggagaactatggctgatggagatgggatttcgattttcgggtcgagt
catatttggattgatcataattcgctttcgaattgtgctgatgggcttattgatgctgtt
atggcttctactgctattactatctccaataattacttcacacaccacaatgaggttatg
ttattgggacatagtgatacctatacaagggataaggttatgcaagttacaattgcttat
aatcatttcggtgaaggtcttattcagagaatgccaaggtgtaggcatggatattttcat
gtagtgaacaatgactatacgcattgggaaatgtatgcaatcggtggcagtgcgagtcct
accattaacagccaaggaaacagatatctcgccccgagaaaccggtttgctaaagaggta
acaaagagagactatgcagggcaatggcaatggaggcattggaattggagatcagaagga
gatcttttcttaaacggagcattcttcacacgttctggatcaggacttggagcgagctac
gctagagcttcaagtttagcagccaagtcatcatcacttgttggcgtcatcacctacaat
gccggtgctcttaattgcagaggtggtcgccggtgttaa
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