Arabidopsis lyrata (lyrate rockcress): 9302176
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Entry
9302176 CDS
T01578
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1
KO
K14411
RNA-binding protein Musashi
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
9302176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9302176
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
9302176
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
SET1_RBD
Motif
Other DBs
NCBI-GeneID:
9302176
NCBI-ProteinID:
XP_020871603
LinkDB
All DBs
Position
Unknown
AA seq
449 aa
AA seq
DB search
MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS
ERVIMEKHIIDGRTVEAKKAVPRDDQQVLKRHASPIQLMSPVHGGGGGRTKKIFVGGLPS
SITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKL
VEVKRAVPKETSPVSNNRSPLPGGLNYGGGSNRISANSYFNNFAPGPGFYNNLGPVGGRF
SPIIGSGRNAVSAFGLGLNHELSLNLNPSYDGTSSTFGYNRIPSNPYFNGASPNRYTSPI
GHNRTESPYISNNRDLWGNRTDTAGPGWNLNVPNENNRGNWGLPSSAVGNDNNGHGRNYR
TSSGLSSSPFNGFEGSIGELYRGSSVYSDSTWQQQQQLASQSSHELDNLSRSYGYDIDNV
GSDPSANDSEVYNGSYNVGNRQTNRGIAA
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggaatcggatctggggaagctcttcattggtgggatttcgtgggatacagatgaagaa
aggttaagagactattttagcaactatggtgatgttgttgaagctgtgatcatgagagat
cgtgccacaggacgtgcacgtggcttcggcttcattgtctttgcagatccttgtgtctca
gagagagtgatcatggagaaacacatcatcgatggccgcacggttgaggccaagaaggcc
gtgcctcgagatgatcagcaggtgctaaaacgacacgctagtcctatccaacttatgtca
cctgtccatggcggtggtggtggaaggacaaagaagatctttgttggaggtttaccgtct
agcattaccgaggaggagttcaagaactactttgatcagtttggtacaattgctgatgtt
gtcgtaatgtatgatcataacacgcagaggcctagaggttttggcttcatcacatttgat
tcagatgatgctgttgatagggttcttcacaagacctttcatgagctcaatgggaaacta
gtcgaggtcaaaagagctgtacctaaggagacttcccctgtttctaataaccgaagcccg
cttcctggcggtcttaactatggaggcgggtctaataggatttctgctaatagctacttt
aataactttgctcctggtcctggtttttataacaatctaggccctgttggtggtcggttt
agtcctattattggtagtggtagaaatgcggtttctgctttcggcctcggtttgaatcat
gagttgagtttgaatttgaatccaagctatgatgggacaagttctacatttgggtataac
cgtattccaagcaacccttacttcaacggtgcttccccgaaccgttacacctctccaatc
gggcacaatagaactgagtctccttacatttcgaacaatagagacttatggggaaacaga
accgacactgcaggtcccggttggaacttgaatgtcccgaatgaaaacaacagaggaaat
tggggacttccttcttctgctgttggtaatgataacaatggccatggaagaaactatagg
acaagttctggactttcctcgtccccatttaacggttttgaaggttctataggggaattg
tacagaggcagctcagtttacagcgactcaacgtggcagcaacaacagcagctagcgtct
cagtcttctcacgagctagacaatttgtctcgctcttacggttatgatattgacaatgta
ggttcagacccatctgcaaatgactcagaagtttacaatggaagctacaatgttggaaat
agacaaactaatagaggtattgcggcatag
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