Arabidopsis lyrata (lyrate rockcress): 9302315
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Entry
9302315 CDS
T01578
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 5
KO
K05391
cyclic nucleotide gated channel, plant
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
9302315
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
aly04040
]
9302315
Ion channels [BR:
aly04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
9302315
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
IQ
Motif
Other DBs
NCBI-GeneID:
9302315
NCBI-ProteinID:
XP_020881260
LinkDB
All DBs
Position
Unknown
AA seq
717 aa
AA seq
DB search
MAGKRDNFVRVDDLDSRLPSSSVAFQQNYASNFSGQLHPIHGANDTSRSFKKGIQKGSKG
LKSIGRSLGFGVYRAVFPEDLKVSEKKIFDPQDKILLYCNKLFVASCILSVFVDPFFFYL
PVINAESKCLGIDRKLAITASTLRTFIDVFYLAHMALQLRTAYIAPSSRVFGRGELVIDP
AQIAKRYLQRWFIIDFLSILPAPQIVVWRFLQSSNGSDVLATKQALLFIVLVQYIPRFLR
VLPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLALERNDACWQKACNDA
GNCSTDFLYCGNQNMDGYAVWNRTKESVLQSKCRADLDDNNPPFDFGIYTQALSSGIVSS
QNFIVKYCYCLWWGLQNLSTLGQGLETSTYPMEIIFSIALAISGLILFALLIGNMQTYLQ
SLTIRLEEMRVKRRDSEQWMHHRMLPQDLRERVRRYDQYKWLETRGVDEEYLVQNLPKDL
RRDIKRHLCLALVRRVPLFESMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIR
GRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNLPSSTRTVKALTEVEAF
ALTSEELKFVASQFRRLHSRQVQHTFRFYSHQWRSWAACFIQAAWRRYCKRKKMEEAEAE
AAAVPSSTAGPSYSIGAAFLATKFAANALRTIHRNRNTKIRDLVKLQKPPEPDFTAD
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcaaacgagacaattttgtgagggtggatgatttggactctaggttaccatca
tcatctgtagccttccaacagaactacgcctccaatttcagtggacaacttcatcctatt
catggagccaatgacacatctagatccttcaagaaaggtatccaaaagggttccaaaggg
cttaagtcgataggccgttcactcggtttcggtgtttatcgagcagtgttcccagaagac
cttaaagtatctgaaaagaagatatttgatcctcaggacaaaatccttttgtattgcaat
aagttattcgtcgcctcatgtattctttcagtgtttgtggacccttttttcttctatctt
cctgtgattaatgctgagtccaagtgcctgggtattgacagaaaactggctatcacagca
agtacattgcggacttttatcgatgtgttttatctagctcacatggctctccagctcaga
actgcttatattgcaccttcatcacgggtctttgggcgaggtgaactcgtgattgatcct
gcacagatagcaaagagatatttacagcgttggtttatcattgattttctctcaatactt
cctgcccctcagattgtagtttggagattcttgcaaagctcaaacggatcggatgtattg
gctacaaagcaggccttgcttttcattgttttggtccagtatataccgcgattcctacgt
gtcttacccttgacgtcagaattgaaaaggacagcaggtgtctttgcggaaacggcttgg
gctggtgccgcttattatctgctcttatatatgcttgcaagtcacatagttggagctttt
tggtaccttttagccttggaacgtaacgacgcctgctggcagaaggcctgtaacgatgca
gggaattgcagcacagatttcttgtactgtggcaatcaaaacatggacggctatgctgtt
tggaacagaaccaaggaatctgttcttcagtccaagtgccgagctgacctcgatgataat
aatcctccatttgactttgggatttatacacaggctttatcgtctggaattgtctcgtct
caaaatttcatcgtaaaatattgttactgtttgtggtggggccttcagaacttgagtaca
cttggacaagggcttgaaaccagtacatacccaatggagattatattttccatagcgctc
gccatttctgggttgatcctctttgctcttctcatcggaaacatgcagacatatctccaa
tctcttaccatccggctcgaagaaatgagagtaaagaggcgtgactcagaacaatggatg
catcacagaatgttaccacaagatcttagggagcgtgtgaggcgctatgaccagtataaa
tggttggagacacgtggtgtagatgaagagtatctcgttcagaatctccccaaggatctc
cggagagacatcaagcggcatctttgtctggctttagtgcgcagagttccattgtttgag
agcatggacgacaagctgctggatgcgatctgtatgcggctaaaaccatgcttgttcaca
gagagtacctacttagtgcgggaaggagaccctgtagacgagatgctattcataatacgt
ggtcgcctcgagagtgtgacaacagatgggggcaggagcggtttcttcaaccgcagtctc
ctgaaagaaggagaattctgcggggaagagcttctgacatgggcattggatccaaaatca
ggtgtaaatctcccgtcttccacgagaactgtgaaagctctgacagaagtagaggcgttt
gcgctgacctctgaggagctgaagtttgtagcaagccagtttcggcgcctacacagcagg
caagtgcagcacacattcaggttttactctcaccaatggaggagttgggcagcttgtttc
atccaggctgcctggcgtagatactgcaagaggaagaagatggaagaggccgaagccgag
gccgcggctgtgcccagctcaaccgctggaccttcatactccatcggggctgcatttctt
gccactaagtttgcggctaatgcgcttcgcaccattcacaggaaccggaacacaaagatt
agggatttggtgaagctgcagaagcctcccgagcctgatttcactgctgactga
DBGET
integrated database retrieval system
