KEGG   Arabidopsis lyrata (lyrate rockcress): 9302328
Entry
9302328           CDS       T01578                                 
Name
(RefSeq) histone-binding protein MSI1
  KO
K10752  histone-binding protein RBBP4
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03082  ATP-dependent chromatin remodeling
aly03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    9302328
   03083 Polycomb repressive complex
    9302328
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:aly03036]
    9302328
Chromosome and associated proteins [BR:aly03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     9302328
  Histone modification proteins
   HAT complexes
    HATB complex
     9302328
   HDAC complexes
    Sin3A-HDAC complex
     9302328
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     9302328
    PRC2.2
     9302328
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     9302328
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    9302328
  Chromatin remodeling factors
   NuRD complex
    9302328
   NuRF complex
    9302328
   NuRF complex (fruit fly)
    9302328
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_EIPR1 Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_EML_2 WD40_WDHD1_1st WDR55 Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR75_1st WD40_RFWD3 Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_RIG_1st WD_LRWD1 eIF2A MIOS_WD40 Beta-prop_HPS5 NBCH_WD40 WD40_MABP1-WDR62_1st
Other DBs
NCBI-GeneID: 9302328
NCBI-ProteinID: XP_020878285
LinkDB
Position
Unknown
AA seq 426 aa
MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLIITHALEWPSLTVEWLPDREEPSGKD
YSVQKMILGTHTSENEPNYLMLAQVQLPLDDTESEARQYDDDRSEFGGFGCATGKVQIIQ
QINHDGEVNRARYMPQNPFIIATKTVNAEVYVFDYSKHPSKPPLDGACNPDLKLRGHSSE
GYGLSWSKFKQGHLLSGSDDAQICLWDINATPKNKSLDAQQIFKAHEGVVEDVAWHLRHE
YLFGSVGDDQYLLIWDLRSPSASKPVQSVVAHSMEVNCLAFNPFNEWVVATGSTDKTVKL
FDLRKLSTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTLEDAE
DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDAPGPGE
EPSKAS
NT seq 1281 nt   +upstreamnt  +downstreamnt
atggggaaagacgaagaggaaatgcgaggtgagattgaggagcgactaatcaatgaagag
tacaagatctggaagaagaacactcctttcctctacgatctcattattactcacgctctc
gagtggccttcacttactgttgaatggcttcctgaccgtgaagaaccttccggcaaagac
tactccgttcagaagatgattctcggtacccatacctccgagaacgagcctaattacttg
atgctagcacaagttcagcttcctcttgacgatacagagagtgaagctcgtcagtacgat
gatgaccgctctgaatttggtggctttggctgtgcaactggaaaggtgcaaattatccag
cagataaatcatgatggcgaggttaatcgagctcggtacatgcctcaaaatccattcata
attgctaccaagacagtaaatgcggaggtctatgttttcgattacagtaagcatccatct
aagccccctcttgatggggcttgtaatcctgatttaaagcttagaggtcacagttctgag
ggatatggtctctcttggagtaagttcaagcagggtcatttgctcagcggctctgatgat
gctcagatctgcttgtgggatattaacgctactcctaaaaacaaatcccttgacgctcag
cagatctttaaggctcatgaaggcgttgtggaagatgttgcatggcatctgagacatgaa
tacctgtttggatccgttggagatgaccaataccttcttatatgggatcttcgttctcct
tctgccagtaaaccagtacagtctgtggttgctcattcgatggaggttaactgcttagcc
ttcaatccatttaatgagtgggttgtggcaacaggatcaactgacaagactgttaaatta
ttcgatctacggaagctaagcactgctcttcacacatttgatagccacaaagaggaggtt
ttccaagttggttggaacccaaagaacgagactatcttagcctcatgttgccttggtaga
agacttatggtttgggaccttagcaggatcgatgaggagcagacactggaggatgcagag
gacggcccacctgagctgctgtttattcacggtggtcacactagcaaaatttcagatttc
tcttggaatccttgcgaagattgggtaatttccagtgttgctgaggacaacatactccaa
atatggcaaatggctgagaacatctatcatgatgaggatgacgctccaggtccaggggaa
gaaccatcaaaagcttcttag

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