Arabidopsis lyrata (lyrate rockcress): 9302338
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Entry
9302338 CDS
T01578
Name
(RefSeq) E3 ubiquitin-protein ligase listerin
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aly03009
]
9302338
04121 Ubiquitin system [BR:
aly04121
]
9302338
Enzymes [BR:
aly01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
9302338
Ribosome biogenesis [BR:
aly03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
9302338
Ubiquitin system [BR:
aly04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
9302338
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
zf-RING_2
zf-rbx1
HEAT_GCN1
FANCL_C
Mak10
zf-ANAPC11
ParcG
zf-C3HC4_2
C1_1
zf-C3HC4
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
9302338
NCBI-ProteinID:
XP_020871899
LinkDB
All DBs
Position
Unknown
AA seq
1858 aa
AA seq
DB search
MGKPKGDAARSKARPSSSSLAASLLPSGSAAAVGFGGYVGSSRFETSLSNEDSASLLDLD
SEVAQHLQRLSRKDPTTKIKALASLSELVKQKKGKELFPIIPQWTFEYKKLILDYNRDVR
RATHDVMTNVVTGAGRDLAPHLKSIMGPWWISQFDLASEVSQAAKSSFQAAFPTQEKRLH
ALILCSAEIFAYLEENLKLTPQNLSDKALASDELEEMYQQMISSSLVGLATLLDILLHKP
DKVGSANINSESKLASKARAVASSSAEKLFSSHKCFLNFLKSESPSIRSATYSLLSSFIK
NVPEVFGEGDVRCLAPALLGVFRENNPTCHSSMWEAVLLFSRKFPQSWVYLNVHKSVLSH
LWQFLRNGCYGSSRVSYPALILFLEVMPTQSVEADKFFVNFFKNLLAGRSMCESSSTDQL
SLLRATTECFLWGLHNASRYCDGPNSIHDLQVDLIDKVLVKILWADFFELSKGSIPPIQR
KSTENLGMGNSASYLQELGRCILEILSGINLLEQNLLSFFCISVQESFLNMLQQGNLEIV
TGSMRKMIDFLLLLERCSVLEGESWPLDQFMGPLLSKAFLWIRSSELIEGVKLLSVSVSV
FGPRKIVPVLIDDIETSTLLSVEKGKNMSPEKLIKVFQEIFIPWCMDGYDSSTGARQDLL
FSLLDDECFTQQWSDVISYVFNQQHQGFNNLAAMKMLLEKARDEITKRSSGQELHQRIGS
RPDHWHHTLIESTAISLVHSSSATTTSAAQFLCSVLGGSTQDSSISFVSRSSLVLIYRGI
LEKLLSFIKQSPLCSVNDTCSSLIVEAIDFDLSSSVDVIVVAKFAAEVIDGSFFSLKSLN
QDTTLLSTILSSIFIIDLESRMTSLVDSTLSESKEKRKDRNLVCDYIHAVCSKMDNQFWK
SINYDVRKSSASILVQFLRSVVLLEDDLQPFELALLCASRMTEVLEYLSLDQSDEENIRG
LLLLERDVWPIWVSPSSSASINTHGMPVHLCELRKSKSQRYVSFINSLIMKLGIHRFLVG
HKDNGFASQAWLSVEILCTWEWPGGNVQTSFLPTLVSFCKGEPSSGGLLNSIFDILLNGA
LVHVKDEEEGLGNMWVDFNNNIVDVVEPFLRALLSFLHILFKEDLWGEEEAMSAFKMITD
KLFIGEETSKNCLRIIPCIMSMIISPLRTKIKSGGSGKDTLLPLEVLLRSWLERSLSFPP
LVLWQSGEDIQDWFQLVISCYPVSEKAEEAKEIQRHVSNEERTLLLDLFRKQNQDPGASS
VVTHLPAVQILLARLIVIAVSYCGNNFNEDDWDFVFSNLKRQIQSAVVVMEETAENVNEF
ISGVSSMEKENDTLEGLGHIVFISDPSINNAQNALYAFSLLNALVKHKSVEYEDNLKSLA
DEIWDPVKDRILEGVLRLFFCTGLAEAIAASYSPEAASIVASFRVDHLQFWELVAQLVVD
SSPRARDRAVRAVEFWGLSKGAISSLYAIMYSSNPIPSLQLAAYTVLSTEPVSRLAIVAD
GNAPLNDESLNDQDSSNAGLPSEEKLLLRDEVSCMVEKLNHDLLDTDLTAPERVQTFLAW
SLLLSHVNSLPSLTQGRERLVQYIEKTANRLILDSLFQHIPLELYMGQNLKKKDGDIPSE
LSVVASAATRAIVTGSSLSTVESLWPIETGKMASLAGAIYGLMLRVLPAYVREWFSEMRD
RSASSLIEAFTRSWCSPSLIENELSQIKKADFNDESFSVSISKAANEVVATYTKDETGMD
LVIRLPVSYPLRPVDVNCTKSIGISDAKQRKWLMSMQMFVRNQNGALAEAIRIWKRNSDK
EFEGVEDCPICYSVIHTGNHSLPRRACVTCKYKFHKACLDKWFYTSHKKLCPLCQSPC
NT seq
5577 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaacccaaaggagatgctgcaagaagcaaagctcgtccatccagcagcagcttg
gcagcttctttgttgccgtctggctctgcagccgccgtaggttttggcgggtatgtcggt
agctctagattcgaaacgtctctgtcaaacgaagactctgcttccctcttggatttggat
agtgaggttgcccagcacttgcaaaggctttcaaggaaggatcctacaacaaagattaaa
gctcttgcttccctgtcagaactggttaagcagaagaaaggaaaggaacttttcccaata
atcccacaatggacatttgagtacaagaagctgatactggactacaatagagatgttcgg
cgagctacgcatgatgtcatgactaatgttgtcactggtgccgggagagatttagctcct
catctaaagtctataatggggccctggtggatttcacaatttgatttggcatctgaagtt
tctcaagcagcaaagtcgtctttccaggcagcattccctacccaggaaaagagattgcac
gccttgattctatgttcagctgagatttttgcttatctggaggaaaatctcaaacttaca
cctcaaaatttatctgataaagcacttgcatcagatgaattagaagaaatgtaccagcag
atgatatcgtcatctctggtggggttggctacacttctagatattttgctccacaaacct
gataaagttggctctgcaaacattaattctgaatcaaaacttgcatcgaaggctagggca
gtagcatcctcctcagctgagaagttgttctcttcccataaatgctttctgaactttcta
aaatctgaaagccctagtattcggtcagcgacttattctttgttaagcagcttcattaaa
aatgttcctgaagtctttggcgaaggagacgtccgatgtcttgcaccagctctgcttggc
gtttttcgagaaaataatccaacctgccactcatcaatgtgggaggctgtcttactgttc
tctagaaaatttcctcagagttgggtctacttaaatgttcataaatctgttctaagtcat
ttatggcagtttcttaggaacgggtgctatggatcctcacgggtttcttatcctgcactg
atattgttcctggaagttatgccaacacaatctgtagaagctgataagttctttgtgaat
tttttcaaaaacttattggctgggaggagtatgtgtgaatcttcaagtacggatcaatta
tcacttcttcgggcaaccactgaatgtttcctctggggattacataatgcttcaaggtat
tgcgatggtcccaattctattcatgatctccaggttgatctaattgataaagtcctcgtg
aagattctatgggcggacttctttgaactatctaagggcagcattccacctattcagagg
aagtcaactgaaaatcttggcatgggtaattcagctagttatctgcaagagctaggaaga
tgcatcttagaaattctttcagggattaatttgctcgaacagaacctgctgtcttttttc
tgtatatctgttcaagagagcttcttgaacatgcttcagcagggaaatttagagatagtt
acgggaagcatgagaaaaatgattgattttctcttattattggagagatgttcagttttg
gaaggtgagagttggcccttggatcaatttatggggccacttttgtccaaggctttcctg
tggataagatcatctgaattgatcgaaggtgtgaaacttttgtcagtttcagtatcagtg
tttggaccaagaaagatagttccagtactaattgatgatatagagacttctacccttctc
tctgttgaaaaagggaagaatatgagcccagagaagcttattaaagtttttcaagaaatt
tttattccttggtgtatggatggatatgactcttcgactggagctagacaagatctccta
ttttcattgctcgatgatgaatgtttcactcagcagtggagtgatgtcatttcttatgta
tttaatcaacaacatcagggcttcaataacctggccgctatgaaaatgcttttagagaag
gcaagggatgaaattacaaaaagaagttctgggcaggagttgcatcaaagaataggttct
cggccagaccattggcaccatacactcatagaatcaactgctataagtctggtccattcc
tcctcagcgactacaacctctgctgctcagttcctgtgttcagttctgggtggttcaacc
caagacagcagtatttcttttgtgtcaagaagctcgttggtcttgatatatagggggatc
ctcgaaaaactgctatcttttatcaaacagtcaccattatgttcagtcaatgatacatgt
tcgtctcttattgtcgaggctatagattttgatttgagcagttctgtagatgtgatcgtg
gttgctaagtttgcagctgaagttattgatggtagtttcttcagtttgaagtctctgaat
caggacaccactctactttcaactattttgtcttctatttttatcattgacttggagagt
agaatgacatcactagtggacagtacgctatctgagtccaaagagaagagaaaggatcgg
aatcttgtgtgtgattatattcatgctgtttgctctaagatggataatcagttctggaaa
tccataaactatgatgtccggaagagttcagcaagcattttggttcagttccttaggtca
gttgtcctacttgaggatgatctgcaaccttttgaacttgcattattgtgtgcttcaagg
atgaccgaggtgttggaatatctctcattggatcaaagcgatgaagaaaatatccgtggc
ctgctcctgcttgagagagatgtatggcctatttgggtcagccccagctcgtcagctagc
ataaatacccatggtatgcctgttcatttgtgcgaattgaggaaatccaagagtcaaaga
tatgtttctttcattaacagcctgatcatgaaattgggaattcaccgatttcttgttggc
cacaaagataatgggtttgcctctcaagcttggctttccgtagaaatactctgcacgtgg
gagtggccagggggtaatgttcaaacttctttcctgccaactcttgtatcattttgtaag
ggtgaaccatcgagtggaggtttactaaattccatttttgacattctactcaacggtgct
cttgtgcatgtaaaggatgaggaagagggcttagggaacatgtgggttgactttaataat
aacatagtggacgtcgtagaaccatttttgagagctctattgtcattccttcacattttg
ttcaaggaagacctttggggagaagaagaagccatgtctgctttcaaaatgatcacagat
aaactcttcataggagaagagacaagcaaaaactgtttgagaattattccttgcattatg
agcatgataatttcaccattacgtacaaaaataaaatctggtggttctggtaaagatact
ctgctgccactggaagttttgcttagaagttggctggagaggtctttgtcgtttcctcct
ctggtgctctggcaaagtggggaagatatacaggattggtttcagcttgttatctcttgt
tatcccgtaagtgaaaaggctgaagaagcaaaggaaatacagaggcatgtgagtaatgaa
gagagaacactcctgcttgacttgttccgcaagcaaaatcaagatcctggtgcatcaagt
gtagttacccatcttccagctgtccaaattctgctcgcaagactaattgtgattgcagtt
agttactgtggaaacaattttaacgaggatgattgggattttgtcttttctaatttgaag
cgtcagattcagtctgcagtagttgtgatggaggaaactgctgagaacgtcaatgagttc
attagtggtgtttcttccatggagaaggaaaatgatactcttgagggacttgggcatatt
gtttttatttctgatccttctataaacaatgctcagaatgctctctacgcattttcgttg
cttaatgcgttagtaaagcataaatcggttgaatatgaagacaatctgaaatccttggca
gatgaaatatgggatccagttaaggatcggatacttgaaggtgttctgcgtcttttcttc
tgcactggtcttgctgaggctattgctgcttcatattccccagaggcagcatctattgtt
gcttcatttcgagttgatcatttgcagttctgggagttggtggctcaacttgtggttgac
tcttctccacgtgcaagagatagagctgtcagagcagtggaattttggggtctaagcaag
ggagccataagctctttgtatgcaataatgtactcttccaatccaatcccgtcattgcaa
cttgctgcatacactgttttgtctaccgaacctgtttccaggctggccatagttgctgat
gggaatgccccattgaatgatgagtctctcaatgatcaggactcaagcaatgctggtttg
ccatctgaagagaagctactgctaagagatgaagtatcttgtatggttgagaagttaaat
catgatcttcttgatacagacttaactgcgccagaaagggtgcaaacgttcctggcatgg
tctttgttgctctcgcatgttaattctttaccttcactaacacaaggacgagagagactg
gtgcaatatatagagaaaactgcaaatcggttgatattagatagtctttttcagcacatt
cctctagaattatacatgggacagaacttgaagaaaaaagatggggatattccgtctgag
ttatctgtggtagcttctgcagccactcgtgcgattgtgacgggttcgtccctgtcaacg
gttgaatcactttggcctattgaaactggaaagatggcttcgcttgctggggcgatatat
ggtctgatgctacgtgtacttccagcttatgttagagaatggttcagcgaaatgcgtgac
cgttctgcatcatctttgattgaagcatttacaagatcgtggtgcagcccttctttaatc
gaaaacgaactgtctcagataaagaaggcagactttaatgatgagagcttttcagtcagc
ataagtaaagcggcaaatgaagtagttgcgacatatacgaaggatgaaacggggatggat
ctcgtgatccggcttccagtttcttacccactcaggcctgttgacgttaattgcacaaaa
agtattggaataagcgatgcgaagcagaggaagtggttgatgtctatgcaaatgtttgtt
cgtaatcagaacggggctctggcggaggcgataaggatatggaagcgaaactcggacaag
gaatttgaaggagtagaggactgcccgatatgttacagtgtgatacacacagggaatcac
agccttccaaggcgagcttgcgtgacgtgcaagtacaagtttcacaaagcatgtttagac
aagtggttctacacgtctcataagaaactttgccccttgtgccaatctccttgctga
DBGET
integrated database retrieval system
