Arabidopsis lyrata (lyrate rockcress): 9302411
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Entry
9302411 CDS
T01578
Name
(RefSeq) E3 ubiquitin-protein ligase RDUF2
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aly04131
]
9302411
04121 Ubiquitin system [BR:
aly04121
]
9302411
Enzymes [BR:
aly01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
9302411
Membrane trafficking [BR:
aly04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
9302411
Ubiquitin system [BR:
aly04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
9302411
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF1117
Zn_ribbon_19
zf-RING_2
zf-C3HC4_2
zf-C3HC4
zf-RING_11
zf-rbx1
zf-RING_UBOX
zf-ANAPC11
zf-C3HC4_3
zf-RING_5
zf-RING_16
zf-RING_10
zf-C4
Motif
Other DBs
NCBI-GeneID:
9302411
NCBI-ProteinID:
XP_002866337
UniProt:
D7MSG1
LinkDB
All DBs
Position
Unknown
AA seq
406 aa
AA seq
DB search
MPSTPTTTSTTTPITASYWCYSCTRFVSVWADQGTATVGGVACPHCDGGFIEEINDSSSA
ATELAIPASTEVRSINNNRRSVIRRRRSGRRPSFNPVIVLQGGAGEREDGEEGDAARDRR
AFEFYYDDGSGSGLRPLPDSVSEILMGSGFERLLEQLSQIEASATGIGRSGNPPASKSAI
ESLPRVEISDCHIGSEANCAVCTEIFEAETDAREMPCKHLFHDDCIVPWLSIRNSCPVCR
FELPSEPNRRSNNNEEDNAVGMTIWRLPGGGFAVGRFNAAMRDGERVLPVVLTEMDGGGI
GNSQDGPRRISWVRSHGTLESDSNGGGSGTGTGGRLRRMVRGMVSLMRRVRPNRSSSSSA
ALSSSSDNLDLNIEVESRVLDRSNSVMRRYFRRNRSNRDSSSSVLH
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcaacgccgacgacgacgtctacaacaacgccgatcacggcttcgtattggtgt
tatagctgtacgcgtttcgtcagcgtttgggctgatcaaggcacagccaccgtcggcggt
gtcgcttgtcctcactgcgacggcggttttatcgaagagattaacgattcttcctccgcc
gctaccgaattagcgattccggcttctactgaagtaagatcgattaataacaaccgtaga
tccgtgattagacgccggagatccggtcgtcgtccgtcgtttaatccggtcatcgtactc
caaggaggcgccggcgagagagaagatggagaagaaggagatgcggctagagatcgacgc
gcttttgagttttattacgatgacggatccggatcgggtcttagaccgcttccggattct
gtatctgagatcttgatgggatctggatttgagcggttactggaacagctaagccagatc
gaagcgtcggctaccggaatcggtagatctggaaaccctccggcgtcgaaatcggcgatt
gagtctttgcctagagtcgaaatttcggattgtcacataggctcggaggctaattgcgct
gtttgcacggagattttcgaggcggagacggatgcacgtgagatgccgtgtaaacacctc
ttccacgacgattgcattgtgccttggctatcgattcgaaactcttgccccgtgtgcaga
ttcgagctaccttcagagcctaatcgacgaagcaacaacaacgaggaggataacgccgtg
gggatgacaatttggagactccccggtggtggattcgctgtcgggaggtttaacgccgca
atgagagacggagagagagttttacctgtggtgttaacagaaatggacggtggtgggatt
ggtaatagccaggacggtcctagacggatctcatgggttaggtcacacggtacactcgaa
tcggatagcaacggtggtggctccggtactggcaccggcggtagattgagaaggatggtt
cgtggaatggtgtcgttaatgaggagagtgagaccaaatcgtagctcttcttcatctgct
gcactttcatcttcttctgataatctggatttgaacattgaagtagaatctagggttttg
gataggtcgaattcagtgatgagaagatacttcaggagaaacagaagtaacagagattct
tcttcttcggttcttcattga
DBGET
integrated database retrieval system
