Arabidopsis lyrata (lyrate rockcress): 9302480
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Entry
9302480 CDS
T01578
Name
(RefSeq) cleavage stimulation factor subunit 50
KO
K14406
cleavage stimulation factor subunit 1
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
9302480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9302480
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
9302480
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
LisH_CTF50
Beta-prop_IFT122_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WDR55
EIF3I
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_NOL10_N
CFAP251_N
ASA1
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_WDR41
Beta-prop_Aladin
DSE1_N
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_VPS8
Cytochrom_D1
Ge1_WD40
Beta-prop_NWD2_C
PAC11
Motif
Other DBs
NCBI-GeneID:
9302480
NCBI-ProteinID:
XP_020878496
LinkDB
All DBs
Position
Unknown
AA seq
429 aa
AA seq
DB search
MGNSGDLEQALQDGNIFRQLNALIVAHLRHHNLSQVASVVASATMTPLYIEVPPNRLLEL
VAKGLAAENNGTLRGVSSSVLLPSPYGSITTPRTASIDFSVTHAKGSSKTIPKHESKTLS
EHKSVVRCARFSPDGMFFATGGADTSIKLFEVPKVKQMISGDTQARPLIRTFYDHAEPIN
DLDFHPRSTILISSAKDNCIKFFDFSKTTAKRAFKVFQDAHNVRSVSFHPSGEFLLAGTD
HPIPHLYDVNTYQCFLPSNFPDSGVSGAINQVRYSSTGSIYITASKDGAIRLFDGVSAKC
VRSISNAHGKSEVTSAVFTKDQRFVLSSGKDSTVKLWEIGSGRMVKEYLGAKRIKLRSQA
IFNDTEEFVISIDEASNEVVTWDARTGDKVAKWPSNHNGAPRWIEHSPDESVFVTCGTDR
SVRLWKESV
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggggaacagtggagatttggagcaggctctgcaagatgggaatatctttagacagctc
aatgccctcattgtagctcatctccgtcatcacaatctctcacaagttgcaagtgtggtt
gcatcagcaacgatgacaccattgtatattgaggttcctcctaaccgtcttctagagctt
gttgcaaagggtcttgcagcggagaacaatgggacattgagaggtgtttcttcatcagtc
ttgttaccttctccttatggatcaatcactactcctcgaacagcttctatcgacttcagt
gttactcatgccaagggctcatcaaagactatcccaaagcatgaatcaaagacgctatca
gagcacaagagcgttgttaggtgtgcaagatttagtcctgatggaatgttttttgcaact
ggcggtgcagacacatcaattaagctctttgaggtgccaaaagttaaacagatgatttca
ggagatactcaagctcgaccattaatacggaccttttatgatcatgctgaacccataaac
gatcttgatttccaccctcgaagcacaatcctaatatctagtgccaaagacaactgtata
aagtttttcgacttctccaaaaccacggctaaacgagcattcaaagtttttcaggatgcc
cataatgtgcgctctgtatcttttcatccgtcaggagagtttcttcttgcaggaaccgat
catccaattccacatctgtacgatgtaaacacatatcagtgctttcttccttcaaacttc
ccagacagtggagtaagtggagccattaatcaggtgcgatattcttccacgggatccatc
tacattacagcctcaaaggatggagctattcgactctttgacggggttagcgcaaagtgt
gttcgctccattagcaatgcacatggaaaatcagaggtcacaagcgcagtgttcactaag
gatcaaaggtttgttctctcatccggtaaggattctacagttaagttatgggaaataggc
tcaggtcgaatggttaaggaatatcttggagcaaagcggataaaactgcggtctcaggca
atctttaacgacactgaagagtttgtaatctccatagatgaagcaagcaatgaggtcgtt
acatgggatgctagaaccggagataaagtggcaaagtggccttctaaccataacggtgca
ccacggtggattgagcactcgccagatgaatcagtctttgttacttgtggaacagacaga
tcagtccggttgtggaaggaatccgtttag
DBGET
integrated database retrieval system
