KEGG   Arabidopsis lyrata (lyrate rockcress): 9302836
Entry
9302836           CDS       T01578                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1 isoform X3
  KO
K14962  COMPASS component SWD2
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    9302836
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aly03019]
    9302836
   03036 Chromosome and associated proteins [BR:aly03036]
    9302836
Messenger RNA biogenesis [BR:aly03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     9302836
Chromosome and associated proteins [BR:aly03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     9302836
    COMPASS/SET1 complex (yeast)
     9302836
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40 WD40_CDC20-Fz WD40_Gbeta Beta-prop_EML_2 WDR55 Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd NBCH_WD40 Beta-prop_Aladin Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_IFT122_1st Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_WDR36-Utp21_1st Beta-prop_VPS8 WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_DCAF4 eIF2A Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N
Other DBs
NCBI-GeneID: 9302836
NCBI-ProteinID: XP_002866764
UniProt: D7MMZ7
LinkDB
Position
Unknown
AA seq 331 aa
MVEFTEREDRVSLELSEEIIQSMEPGAVFRDYNCRISSIDFHKTSTCMVTASDDDSIRLY
DVASATCLKTINSKKYGVDLVCFTSHPTTVIYSSRNGWDDSLRLLSLHDNKYLRYFKGHH
DRVVSLSLCSGGECFISGSLDRTVLLWDQRVEKCQGLLRVQGRPAAAYDDQGLVFAIAFG
GYIRMFDARMYEKGPFEIFSVGGDLSEANVVKFSNDGRLMLLTTMDGFIHVLDSFRGTLL
STFSVKPVAAESTLDATFSPEGMFVVSGSGDGSTHAWGVRSGKQVHSWMGIGSEPPVIKW
APGSPMFVTGSSELAFVIPDLSKLPAYAIRK
NT seq 996 nt   +upstreamnt  +downstreamnt
atggtggaatttacagagagagaggaccgagtttctttggaactcagcgaagaaattata
cagagcatggaacctggcgccgttttcagagactataattgcaggatcagctcgattgac
tttcacaaaacttcaacttgtatggtgacagctagcgacgatgactcaattcgcctctat
gatgttgccagcgccacatgtctgaagacaattaatagcaaaaagtatggtgttgatctt
gtttgcttcacttcccatcctactactgtcatctactcttccagaaacggatgggacgac
tctctgaggcttctctctttgcacgataataagtacttgcgctacttcaaaggccatcat
gacagagttgtttcgcttagcttgtgttctggtggagaatgcttcatctccggttccctt
gatcgaactgttttgctttgggatcaaagggtcgagaaatgccagggtctcttacgagtc
caaggaaggcctgctgcagcatatgatgatcaagggttagtttttgcaattgcctttggt
ggctacataagaatgtttgatgcccgtatgtatgaaaagggtccttttgaaatattttcc
gttggtggtgatctttctgaggctaacgttgtgaaatttagtaatgatggaaggctcatg
ctgctgacaaccatggatggttttattcatgtgcttgactcgtttcgtggaacacttctg
tccacatttagtgtgaaaccagtagctgcagaatctacattggatgcaaccttcagtcct
gaagggatgtttgttgtttcaggttcaggcgatggtagtacccatgcatggggtgtaagg
agcggaaaacaggtacatagttggatgggtatagggagtgagcccccagtcattaaatgg
gctccaggaagtcccatgtttgtgacaggctcttccgaacttgcgtttgttattccggac
ttgtctaaattgccagcttatgccatacggaaatag

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