Arabidopsis lyrata (lyrate rockcress): 9303297
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Entry
9303297 CDS
T01578
Name
(RefSeq) nuclear poly(A) polymerase 4 isoform X1
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
9303297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9303297
Enzymes [BR:
aly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
9303297
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
9303297
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
MTPAP-like_central
Nrap_D2
Motif
Other DBs
NCBI-GeneID:
9303297
NCBI-ProteinID:
XP_020872874
LinkDB
All DBs
Position
Unknown
AA seq
782 aa
AA seq
DB search
MMVGTQNLGGSLPPLNSPKSYGITKPLSLAGPSSADIKRNVELEKYLVDEGLYESKDDTM
RREEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCV
GPSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVV
PQDLDISSSSVLCDVDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYS
NVTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFP
VWDPRKNHRDRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHW
SSLFEQYMFFEAYKNYLQVDIVAGDAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQ
PNEYVDTARQFLHCAFFMGLQRAEGVGGQECQQFDIRGTVDEFRQEVNMYMFWKPGMDVF
VSHVRRRQLPPFVFPNGYRRPRQSRHQNQPGGKSGEDGTVSHSGSVVERHAKRKNDSEMM
DARPEKPEKRASLSPQSLDIVSPESSAITTGWTPPVCNLRRPPSEEIEAENLNTECTELT
NFARNECNSGSEQVLEVDSMALVQECSDPAEPLGKCVTPDSSDVVACVSGQEENLDRNLR
SVSISGTDSQPLPRLLDTKGVVDELEKESKTFDGTRTTGNIADSVQPSRSCGQNRDYEGF
GFPAANSDPLGKENLYSQSGMSEDLQVIKSNSLVSGMEKSEDRARSESLQKSQIRLSLKS
TV
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgatggtgggtacacaaaatttaggtggttcgttgccgccgctgaattcccctaaaagc
tatggaattacgaagccgctctcgcttgctggcccttcctcggcggatattaagcgtaat
gtcgagctggagaagtacttggttgatgagggactctacgagagcaaggacgataccatg
cggagagaggaagttctgggacgcattgatcagattgtaaagcactgggtgaaacagtta
acgcagcaaagaggatacacagatcagatggtggaggatgcaaatgctgtcattttcacc
tttggatcctaccgacttggcgtgcatggtcctggggctgacattgatactttgtgtgtt
gggccatcttatgttaaccgggaggaggatttcttcatcatcttgcatgatatattggct
gagatggaagaagtgactgagctccatcctgttcccgacgcccatgttccggtcatgaaa
tttaagtttcaaggaataccgattgatctgctctatgctagcatatcacttttagttgtg
ccacaggatctggatatctccagctcttctgtgctgtgtgatgttgatgagccaaccgtt
cgaagtcttaatggttgtagagttgctgatcagattctgaaactcgttccaaattttgag
cacttccggacaactttaagatgcctgaagtactgggctaagaagcgtggcgtgtattca
aatgtgactggatttcttggcggtgtaaactgggcacttttggttgctcgtgtctgccag
ctctatccaaatgcaattcctagtatgctggtttctcgttttttcagagtgtatactcaa
tggcggtggccgaacccagtcatgctttgtgcaatagaagaggatgagcttggatttcct
gtctgggaccctcgtaaaaatcatcgtgaccgctatcaccttatgccaataataactcca
gcttacccatgcatgaattctagttacaatgtttctcaaagcactcttcgcgttatgaca
gagcagttccagtttggtaacaatatcttgcaggagattgaattaaataaacagcactgg
agctctttatttgaacaatatatgtttttcgaggcatataaaaactaccttcaggttgat
atagtggcaggagatgcagaagatttattggcttggaagggttgggtggagtcgcggttc
agacagctgaccttaaagatagaaagagacactaatgggatgttaatgtgccatccccaa
ccaaatgagtatgtagacacggctaggcagtttctgcattgtgcctttttcatgggcttg
cagagggcagagggagttggtggtcaagaatgtcaacaatttgatatacgtggtacggtc
gatgagttcagacaagaagtaaacatgtatatgttctggaaacctgggatggatgtgttc
gtttctcatgttcgtagacgacagcttccaccttttgttttcccaaatggatatcgaagg
cctcggcagtccaggcaccaaaatcaaccgggtggaaaatctggtgaagatggcactgtt
tctcattctggctctgtggtggagaggcatgccaagagaaagaacgatagtgaaatgatg
gatgcgaggccagagaaacctgagaagcgtgcatctcttagtccacagagtctagatata
gtttctcctgaaagtagtgctatcactactggttggactcctcctgtttgcaaccttaga
aggccaccaagcgaggaaatagaagctgaaaatttgaacaccgagtgtactgaactcaca
aactttgctcgaaatgagtgtaactctggcagcgagcaagttcttgaagtagatagtatg
gctctagttcaagaatgctctgatccggctgagcctttgggaaagtgtgtaacacctgac
tctagtgatgtggtagcatgtgtaagtgggcaggaagaaaacttagatcgtaatttgagg
tctgtatccatcagtggtactgactcccaacctcttccgaggctacttgatacgaaaggt
gttgtcgatgaacttgagaaagaatcaaagacatttgatgggacgaggaccactggaaat
attgctgacagtgttcaacccagcagatcttgtgggcagaaccgtgattatgagggtttc
gggtttcctgctgcaaattcagatcctttgggaaaggaaaacttgtactctcaaagtggc
atgtcggaagaccttcaggttattaagtcaaactctttggtcagcgggatggagaagtcg
gaagacagagctaggtcagaatctttgcagaagtcacagataaggttaagcttaaagtcc
actgtgtga
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integrated database retrieval system
