Arabidopsis lyrata (lyrate rockcress): 9303413
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Entry
9303413 CDS
T01578
Name
(RefSeq) putative cyclic nucleotide-gated ion channel 9 isoform X1
KO
K05391
cyclic nucleotide gated channel, plant
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
9303413
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
aly04040
]
9303413
Ion channels [BR:
aly04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
9303413
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Ion_trans_2
IQ
Utp25_C
Motif
Other DBs
NCBI-GeneID:
9303413
NCBI-ProteinID:
XP_002867341
UniProt:
D7MBU6
LinkDB
All DBs
Position
Unknown
AA seq
733 aa
AA seq
DB search
MLDCAKKAVKSQVISGHLEKFVRLDSMDSRYSQTSDAGLNRCTLNLQGPTRGGGAQGNNV
SSGSFKKGFRKGSKGLWSIGRSIGLGVSRAVFPEDLKVSEKKIFDPQDKFLLLCNKLFVT
SCILAVSVDPLFLYLPFVKDNEKCIGIDRRLAIIATTLRTVIDAFYLFHMALRFRTAFVA
PSSRVFGRGELVIDPAQIAKRYLQQYFIIDFLSVLPLPQIVVWRFLGISGGASVLATKRA
LRSIILLQYIPRFIRLYPLSSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGALWYLLA
LERYNGCWSKACGNNSLDCQRNFLFCGNENMDGYAAWSTIKDSVLQTNCPVNTTDNPPFD
FGIYLRALSSGIVSSKSFVSKYFFCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAIAGL
LLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETR
GVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLYTESSYL
VREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGDFCGEELLTWALDPKSGSNLP
SSTRTAKALTEVEAFALIADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAAIFIQAAW
RRYVKKKKLEQLRKEEEEGEGSVTSIRATFLASKFAANALRKVHKNRIEAKSTKELVKYQ
KPSEPDFSADDPC
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgttagactgtgccaaaaaagcagtgaaatcacaagtaatcagtggccatctcgagaaa
tttgtaaggttggatagtatggattctaggtactctcagacttctgatgctggtcttaac
agatgcactctcaatttacaaggaccaacacgtggtggtggtgctcagggcaacaatgtt
tcttctggttcctttaagaaaggatttagaaaaggctctaaaggtctttggtctatagga
agatcaattggtttgggggtttcacgagcagtttttcctgaagatcttaaagtatcagag
aagaagatttttgatccacaggacaagtttcttttgctctgcaacaagctgtttgttact
tcttgcattctcgctgtgtctgtggatccgctcttcttgtatcttccttttgttaaggat
aatgagaaatgtatcggtatagaccggagattggctatcatagcaacaacactgcggaca
gtgatcgatgcgttttatctttttcatatggctcttcggtttagaacagcttttgtcgcc
ccttcttctagggtttttgggcgtggcgaacttgtgatcgaccctgcacagatagcaaaa
cggtatttgcagcagtatttcatcattgactttctctctgtgcttccgcttccacagatt
gtagtttggagatttcttggcatctctggaggtgcaagtgtgctggcaacaaagcgggcg
ttgcgatcgatcattttacttcaatatattccgagattcattcggctgtatcctttgagc
tcagagttaaagagaacagctggtgtttttgctgaaactgcttgggctggtgcagcttat
tacttgctactctacatgctcgcaagtcatattgttggggctttatggtacttattggcc
ttagaacgctataatggatgctggagcaaggcttgcggtaataatagcctggactgtcaa
agaaacttcctgttttgtggtaatgaaaatatggatggttatgcagcttggtctaccatc
aaagattctgttcttcaaacaaattgtccagttaatacaaccgataatcctccttttgat
ttcggaatctacttaagagccctgtcttctggcattgtctcatctaagagctttgtctct
aagtacttcttctgtttatggtggggacttcagaatctcagcactcttggtcaagggctt
caaaccagtacataccctggagaggttatattctccatagcacttgctattgctggactt
cttctctttgctcttcttattggaaacatgcagacttatcttcaatcccttactatacgg
cttgaagaaatgagagtaaaaagacgcgactcagaacagtggatgcatcatcgaatgctt
ccaccggaactgcgggaacgagtcagacgatatgaccagtacaaatggttggagacacgc
ggagttgatgaagagaacttggttcagaatctcccaaaggatctgagaagagatatcaaa
cgccatctctgtctggctttggttcggagggttccattgtttgagaacatggatgagagg
ctgctcgatgcaatctgtgagcggttgaagccgtgtctgtacacagagagctcttatttg
gttcgggaaggagacccggttaatgagatgctcttcattatccgtgggcggcttgagagt
gtgaccaccgatggcgggagaagcggtttcttcaaccgcagtttgcttaaagaaggagat
ttctgtggggaagagcttttgacatgggcacttgatcccaaatccggttccaatctacca
tcctctaccagaaccgcaaaggctctaactgaagtagaggcttttgctttgatagccgat
gagctcaaatttgtggctagccagttcaggagactacacagtaggcaagttcaacacaca
ttcagattctactcacaacaatggagaacttgggctgctattttcatacaagccgcgtgg
cgacgatatgtgaagaagaagaaacttgagcaactcaggaaagaagaagaagaaggagaa
ggatcagttactagcatcagagcgacgttcctggcttcaaagtttgctgccaatgcactt
cgtaaagttcacaagaaccgtattgaagcaaagtctactaaagaacttgtgaaatatcag
aagccttcagaacctgatttctctgctgatgatccttgttga
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