Arabidopsis lyrata (lyrate rockcress): 9303463
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Entry
9303463 CDS
T01578
Name
(RefSeq) WD-40 repeat-containing protein MSI5
KO
K10752
histone-binding protein RBBP4
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03082
ATP-dependent chromatin remodeling
aly03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
9303463
03083 Polycomb repressive complex
9303463
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aly03036
]
9303463
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
9303463
Histone modification proteins
HAT complexes
HATB complex
9303463
HDAC complexes
Sin3A-HDAC complex
9303463
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
9303463
PRC2.2
9303463
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
9303463
Heterochromatin formation proteins
Other heterochromatin formation proteins
9303463
Chromatin remodeling factors
NuRD complex
9303463
NuRF complex
9303463
NuRF complex (fruit fly)
9303463
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EML
WDR55
EIF3I
Beta-prop_DCAF12
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
WD40_RFWD3
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_IFT140_1st
Beta-prop_IP5PC_F
ANAPC4_WD40
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
9303463
NCBI-ProteinID:
XP_020874593
LinkDB
All DBs
Position
Unknown
AA seq
488 aa
AA seq
DB search
MESEEAAATVQATRPRRVSRTPVTAILTKKRGRKPKKNDESHSPFSQQQSQKATVDDKYS
QWKTLLPILYDSFVNHTLVWPSLSCRWGPQLEQAASKTQRLYLSEQTNGSVPNTLVIANC
ESVNRQLNEEAHSPTVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDTETQPD
RYAVLGAPHSRPDLLLTGHQDNAEFALAMCPIEPFVLSGGKDKSVVLWSIQDHIAMAGTD
SKSPGSSFKQTGEGSNKTGCPSVGPRGVYHGHEDTVEDVAFCPSSAQEFCSVGDDSCLML
WDARTGTGPAIKVEKAHDADLHCVDWNPHDNNLILTGSADNTVRVFDRRNLTSNGVGSPI
YKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDTVGKKSERAPKTPAGLFFQHAG
HRDKLVDFHWSPMDPWTIVSVSDNCESSGGGGTLQIWRMSDLIYRPEDEVLTELEKFKSH
VFTCTSKP
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggaaagcgaagaagcagcagcgactgttcaagccaccaggccgagaagagtatctagg
actccggtgacggccattttgacgaagaagagaggtcggaaacctaagaaaaacgacgag
tctcattcacctttttctcaacagcagagtcaaaaggccactgttgacgacaagtactct
cagtggaagactcttcttcccattctctatgattcgtttgttaaccataccctcgtctgg
ccctctctctcttgcagatgggggccacagcttgagcaagcagcttctaagactcaacgt
ctctatctctcggaacaaacgaatggcagtgtgcctaatactttggtcatagccaattgc
gaatctgttaataggcagcttaatgaagaggcacactctccaactgtgaagaagtacaag
accatcatccaccctggagaggtcaacagaatcagggaactcccacaaaatagcaagatt
gtagctactcacaccgacagtcctgatgttctcatttgggacactgagactcaaccagac
cggtatgctgtgcttggagctccacattctcgtccagatttgttactaactgggcaccag
gataatgctgaatttgctcttgcaatgtgcccaatcgaaccttttgttctctctggaggg
aaggacaagtccgttgttttgtggagtatccaagaccatatcgcaatggctggtacggat
tccaaatcccctggatcaagcttcaagcagactggtgaaggtagtaataaaactggttgt
ccttctgttggccctcgaggcgtatatcatggccacgaagatacagttgaagacgtggca
ttctgtccatctagtgcacaagaattctgcagtgttggtgatgattcttgcctaatgcta
tgggacgcaagaactggcactggtcctgccataaaggttgagaaggcacatgatgctgat
cttcactgtgtcgattggaatcctcatgacaacaatctgatcctgaccgggtcagcagat
aacactgtccgtgtgtttgaccgccgaaacctgacctcaaatggagttggttcacctatt
tacaaatttgaaggccacaaggctgctgttctttgtgttcagtggtctcctgataaatca
tctgtgtttgggagttcagcagaagatggtctcttgaacatatgggactatgatacggtc
ggcaagaagtccgagcgtgcacccaaaactcctgctgggcttttcttccagcatgctggt
cacagggacaaattggtcgacttccactggagcccaatggacccttggactattgtcagt
gtttctgataattgtgagagtagcggtggaggtggtacgttgcagatatggcggatgagt
gacttgatttacagaccggaagatgaagtcctgacagagctagagaaattcaagtcacat
gttttcacatgtacctccaagccttga
DBGET
integrated database retrieval system
