Arabidopsis lyrata (lyrate rockcress): 9304278
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Entry
9304278 CDS
T01578
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9304278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
9304278
Spliceosome [BR:
aly03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
9304278
Complex C
U5 SnRNP specific factors
9304278
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
9304278
NCBI-ProteinID:
XP_020873070
LinkDB
All DBs
Position
Unknown
AA seq
2007 aa
AA seq
DB search
MTRNGTSLMISTRLSLDHGCVLKAELLSLTCTITGQGKSNYVCDDDEDDFVLPNGVEPLL
QETQLYTDTTTDGISLLFAPRPFNMRSGKTRRAEDIPLVSEWFKEHCPTSHPVKVRVSYQ
KLLKCYVLNDLHCRPPKPQKKKHLFRSLAGTKFFQSTELDWVEAGLQVCRQGYNMLNLLI
HRKGLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTXVVDANVQFRLGNV
DAFQLADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGF
WAPMWRVWLFFLRGIVPLLERWLGNLLGRQFEGRHSKGMAKTVTKQRVESHFDLELRSAI
MHDIVDAMPEGTKQNKVRTIEQHLSEAWRCWKANIPWKVPGLPLPVENLILRYVKHKADW
WTNITHFNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQYNYLKDGSPVTPDEAVAT
YRTTQEWLEARRFSPIPFPPLSYKHETKLLILALERLKESCGGERLNQQQREELGLIEQA
YDNPHETLARIKRHLFTQRQFKEVGIEFMDLYSYVIPVYEIDPLEKITDAYLDQYLWYEA
DKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQGIWDTSDGQCVVMLQTKLEKLFEKVDF
TLLNKLLRLIVDPSIADYVTAKNNVDLSYKDMRHTNSYGLIRGLQFSSFVTQFYGLVLDL
LLLGLTRANEIAGPPQKPNEFMTYWDTKVETRHPIRLYSRYVDKVHIMLKFTHEEVRDLI
QRYLREHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSIFWEMKNRLPRSLTTFEW
ENSFVSVYSKDNPNLLFSMCGFEIRILPKARMSQEAFSNIGDGVWNLQNEQTKEKTAVAF
LRVDEEQIKVFENRVRQILMSSGSATFTKITNKWNTALIGLMTYFREATLHTPELIDLLV
KGESKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMSHILIPESDRRYSRQTDVG
VTHFRSGMSQEEDLKIPNLYRYIQPWESEFIDSQRVWAEYALKRQESQAQNRRLTLEDLE
DSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLRQNSFWWTHQRHDGKLWNLNN
YRTDVIQALGGVESILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQI
PNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHMWQMIHESV
VMDLCQVLDQHMDEMGIDIVQKETIHPRKSYKMNSSCADILMFGASKWPMSKPSLVTDSN
DMFDQKASKKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAY
NVYSAFGNWFPDSKSLIAKAMNKIIKSNPTLYGLRERIRKGLQLYSSEPTEPNLSSQNYG
EIFSNQIIWFIDDTNVYRVTMHKTFEGNLTTKPINGAAFIFNPRTGQLFLKVMHTSVWAG
QKRLGQLAKWKTAEEVAALVRSFPVEEQPKQVIVTRKGMLDPIQTTMKDFPNIVIKGSEL
QLPFQACLKIEKFCDLILKATEPQMNLFNIYDDWLTSISSYTAFSRLILILRALHVNNEK
AKMLLKPDKSVVTETHHIWPSLTDDQWMKVEVALKDLILFDYAKKNNLNISALTQSEIRD
IILGAEITPPSQQRQQIAEINKQAKEVRQLSAVTTRTTNVHGDELIVTTISPYEQSAFGS
KTDWRVRAISATNLHLRVNHIYVNSYDVNETGYTYIMPKNILKRFIRIADLRTQIAGYMY
GISPLDNPQVKEIRCVVMVPQRGSHQQVHLPSSLPEHDFLKDFEPLGWMHTQPNELPQLS
PQDVTSHARFLENNKQWDREKCIILTCSFTPGSCSLTSYKLTETGYEWGRLNKDSGSNPQ
GYLPTHYDKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTESMKYSVKLGNPKEYYDNEH
RPTHYLEFSNMEEDRNFSERDREDCYA
NT seq
6024 nt
NT seq
+upstream
nt +downstream
nt
atgacgaggaatggaacgagtttaatgatatcaacaaggttatcactcgatcacggctgc
gtactgaaggcagaattgctttcccttacttgtacaataacaggccaaggaaagtcaaac
tatgtatgtgatgatgatgaggatgactttgtattacctaacggagtggagcctctgcta
caagagactcagctttacactgacactacaactgatgggatttcgttgttgtttgcccca
agacctttcaatatgaggtctgggaagacgcgacgggcagaagatataccgttggtgtca
gagtggttcaaggagcactgtccaacatcacatccagtcaaagttcgggttagttaccag
aagcttttgaaatgttatgtgctgaatgatttgcactgtagaccacctaaacctcagaag
aaaaagcacttgttccggtctcttgcaggtacaaaatttttccaaagcactgaacttgat
tgggttgaagctggtctgcaagtttgtcggcaggggtataatatgttgaatctgttgatt
cataggaagggtttgaattacctgcatcttgattacaacttcaacctcaagcctgttaag
actttgacgactaaagagcgtaagaagtcacgttttgggaatgcttttcatctctgtcgc
gagattctccgcctgactnncgtggttgacgcaaatgtccaattccgtcttgggaatgtt
gatgccttccaattggctgatggcctgcaatatattttctcccatgttggccagttgaca
ggtatgtatcgttataagtacagactgatgagacaaattaggatgtgtaaggatttaaaa
cacttgatctattaccgtttcaatactggtcctgtgggtaaaggaccagggtgtggattt
tgggctccaatgtggagagtgtggttgtttttcctccgtggaatagttcctttacttgaa
cgatggttagggaatcttcttggacgtcaatttgaggggcgtcactcaaaaggaatggca
aagaccgtcacaaaacaaagagtcgaaagccattttgatttggagcttcgatctgctatc
atgcatgatatcgttgatgccatgccagagggaaccaagcagaataaagtgaggacaata
gaacagcaccttagcgaggcatggcggtgttggaaagctaatatcccgtggaaggtccct
ggactgcctctgccagttgagaatttgatcctccgatatgtgaagcataaggctgattgg
tggacaaatattactcacttcaatcgtgagcgtatcagaagaggggctactgttgataag
acagtttgtagaaagaatcttggaaggttgactcgtctttggttaaaggcagaacaggaa
agacaatacaattacctgaaagacggttcacctgtcactccggacgaagctgtggcaact
tatagaacgacccaagagtggctggaagctaggagattttcaccaattccattccctcct
ctgtcgtacaaacacgagacaaagttgctcatcctcgcccttgagagactgaaagaatca
tgtggaggtgaaaggttgaaccagcagcagcgagaagagcttggtctaattgaacaagct
tatgacaacccgcatgaaactctagcgcgaattaaacgtcatcttttcacgcagcgtcag
ttcaaagaagtgggcattgagtttatggatctctacagctatgtgattccggtctatgaa
attgatcctttagagaaaattacggatgcctatcttgatcaatacttgtggtacgaggct
gacaagcgccacttgtttcccaactggattaagcctgcagactcagagccgccacctctt
ctggtttacaagtggtgtcagggtatcaacaatttgcaaggcatatgggacacatctgat
ggacagtgtgtggtgatgctccagacaaagttggaaaagttgtttgagaaggttgatttc
acattattaaacaagcttcttcgtttgattgttgaccccagtattgcagactacgtgact
gccaagaataatgtggatctgtcttataaagatatgagacatactaactcgtatggtctc
attagaggacttcaattctcatcctttgttactcagttttatggactagtgcttgatctt
ttgcttcttggtttgactcgagcgaacgagattgctgggccaccgcagaagcctaacgag
tttatgacctattgggatacaaaagttgaaacacgccatcccataagactatattctcgg
tatgtagacaaagtgcacataatgttaaaatttacccatgaagaggttcgagatcttatt
caacggtatcttagggagcatcctgatcccaataatgagaacatggtgggatataacaac
aagaagtgctggccgagagatgcaaggatgaggttgatgaaacatgatgtcaatcttggt
agaagtatcttctgggaaatgaagaaccgtcttcctcggagccttacaacttttgagtgg
gagaatagctttgtctctgtgtacagcaaggacaatcctaatctgctgttcagcatgtgt
ggatttgaaatccgcatacttccaaaagccaggatgagccaagaagctttcagcaacata
ggggatggtgtgtggaatctacagaatgaacagacaaaagagaagactgcagttgctttt
ctgcgagttgatgaagaacaaattaaggtgtttgagaatcgtgtgaggcaaattttaatg
tcgtcagggtcggccacatttaccaaaatcaccaataaatggaacacagctttgataggt
ctcatgacttactttcgtgaagccactctacatacgccagagctcattgatctgttggtt
aaaggtgaaagtaaaatccaaacaaggattaagattgggctgaattcaaagatgcctagt
cgatttcctcctgttgttttttacaccccgaaggaactcggtgggcttggaatgttgtct
atgagtcatatactgatcccagaaagtgaccgtcggtacagcagacaaacagacgttggt
gttacccactttaggagtggaatgagtcaagaagaggatctgaagatacccaatctttac
cgttacatacagccatgggaaagtgagtttattgattcacagcgtgtgtgggcagagtat
gctttaaagaggcaggaatcacaagcccaaaatagacgtcttacacttgaggatctggaa
gactcctgggataggggaattccgcgtataaacacgctttttcagaaggataggcacaca
ttagcatatgataaaggttggagagtccggactgacttcaagcagtaccaagtcctgaga
caaaattctttctggtggactcatcagaggcatgatgggaagttgtggaacctgaacaat
tatcgaactgatgtaatccaagctcttggaggtgttgagagtattcttgagcacacctta
tttaagggaacatacttcccaacatgggagggtcttttctgggagaaggcatctgggttc
gaggagtcaatgaaatataagaagctgacgaatgcacagaggtctggtctgaaccagatt
cctaatagaagattcacgctctggtggtcgccaacaatcaatcgagcaaatgtttatgtc
ggtttccaagtgcagttggatctaactggaatattcatgcatggaaagattcctaccctt
aagatatctttgattcagatttttcgtgcccatatgtggcaaatgatccacgagagcgtt
gttatggatctttgccaagtattggaccaacatatggatgagatggggatagatattgtg
cagaaggagacaattcatccaaggaagagttacaaaatgaatagctcttgtgctgatatt
cttatgtttggtgcctctaaatggccaatgtcgaagccaagtctggtgaccgactcgaat
gatatgtttgatcagaaagctagtaagaaatattggatagatgtacagcttcgatgggga
gattatgactctcatgacattgaacgttacactagggccaagttcatggattatacaacg
gataacatgtctatctatccatctccgacaggtgtgatgattgggattgatttggcatac
aatgtgtattctgcttttggtaattggttccctgattcaaaatctttgattgctaaagca
atgaacaagattattaagtcaaatccgacattatatgggttgagagaaaggataaggaaa
ggtttgcagctatactcatctgagcctacagagccaaatttgtcatctcaaaactatggc
gaaatattcagcaaccagataatatggtttattgatgataccaacgtctatcgtgtgaca
atgcataagacatttgaaggaaatctgacaacaaagccaatcaatggtgcagcttttatt
ttcaatccaagaactgggcagctattcctgaaggttatgcatacaagcgtttgggctggt
cagaagcgtcttggtcagcttgcaaaatggaaaactgctgaagaggttgctgcacttgtg
cggtctttccccgttgaagaacagccaaaacaagttattgtgactcgtaagggaatgttg
gaccccattcagactaccatgaaggattttcccaacattgttatcaagggaagcgaactg
cagcttccattccaggcttgcctgaagattgagaaattttgtgatctgattttgaaagct
actgagccgcagatgaacctcttcaatatctatgatgattggttgacgagcatatcttct
tacactgccttctcaagactcattctcatcctccgtgctcttcatgtcaacaatgagaag
gctaagatgttactgaagcccgacaagtctgttgtcactgagacacatcacatctggcct
tctctcactgacgaccaatggatgaaggtggaggttgctcttaaagatctcatccttttt
gactacgccaagaagaataacctgaatatatcagctttgacacagtcagagataagggat
attattcttggagctgagattactccaccgtctcaacaaaggcaacaaatagctgagatt
aataaacaggccaaagaagtgagacagcttagtgcagtcacaacaaggaccactaatgtt
catggtgatgaactcattgtcaccactattagtccctatgaacagtctgcatttggttcc
aaaacagattggcgagtgcgggcaatctcagctactaacctccaccttagggtcaaccac
atttatgtgaactcatatgatgtaaatgaaacaggatacacctacataatgccaaagaac
atcttgaagagattcatacgcatagcagatcttcgtactcagattgctgggtatatgtat
ggtataagtccccttgataatcctcaggtcaaggaaatacgatgcgttgtgatggtgcca
cagcggggatcacaccagcaagttcacttgccttcatctcttcctgagcatgatttctta
aaggattttgagcccctaggatggatgcacacacagcctaatgagcttcctcagttgtcg
ccacaagatgttacatcacatgcacgttttctggagaataacaagcaatgggacagagaa
aaatgtatcatcttgacttgcagtttcactccaggctcatgttctttgacctcatataag
ctgacggaaactggatatgaatggggacgtctcaacaaggacagtggcagcaatccccaa
ggctatcttccgacacactatgacaaggttcaaatgctattgagtgaccggttccttggg
ttttacatggttcctgataacggaccatggaactataactttatgggggtgaagcataca
gagagcatgaaatatagtgtgaaactcggaaaccccaaggagtactatgacaatgagcat
cgacccactcattatctggagttcagcaatatggaagaggatagaaacttcagcgagaga
gatcgtgaggactgttatgcttga
DBGET
integrated database retrieval system
