Arabidopsis lyrata (lyrate rockcress): 9304413
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Entry
9304413 CDS
T01578
Name
(RefSeq) probable pectate lyase 15
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly00040
Pentose and glucuronate interconversions
aly01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
9304413
Enzymes [BR:
aly01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
9304413
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
9304413
NCBI-ProteinID:
XP_020875439
LinkDB
All DBs
Position
Unknown
AA seq
469 aa
AA seq
DB search
MASSSQKLISVCVALLVVLALTAMIFRNSEISLSRKLKTEVIQSSNSSTMAATRKLKTEE
FQSLNSSTMAATRLDGEPQQQHAVAADPDMVADEVAKLVQMSEQNRTARRKLGFFSCGTG
NPIDDCWRCDRNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPTDEDVVNPKPGTLRH
AVIQEEPLWIVFKRDMVIELKQELIMNSFKTIDGRGSNVHIANGACITIQFITNVIIHGL
HIHDCKPTGNAMVRSSPSHFGWRTMADGDAVSIFGSSHIWIDHNSLSHCADGLVDAVMGS
TAITVSNNHFTHHNEVMLLGHSDSYTKDKLMQVTIAYNHFGEGLVQRMPRCRHGYFHVVN
NDYTHWEMYAIGGSAEPTINSQGNRYAAPMDRFAKEVTKRVETDASEWKKWNWRSEGDLL
LNGAFFRPSGAGASASYGRASSLAAKPSSMVDTITSTAGALGCRKGRPC
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgtcttctcagaaactgatcagtgtttgtgtcgctctgctcgtcgttttagct
ctcacggcgatgattttccggaacagtgaaatctctctctccaggaagctgaaaacagag
gtgattcagagctcaaatagctcaacaatggcggcgacaaggaagctgaaaacagaggag
tttcagagcttaaacagctcaacaatggcggcgacaaggcttgatggtgaaccacaacaa
caacacgccgttgctgctgatccagatatggttgctgatgaagtcgctaagcttgttcaa
atgagtgaacagaacaggacagcaagaaggaagctaggattcttctcatgtggaactggt
aatccaattgatgactgttggcgttgtgaccgtaactggcacaagaaccgtaaacgcctt
gcggattgtgggattggttttggaaggaacgcaattggtggtcgtgatggacgcttctac
gttgttactgacccgactgatgaagatgttgttaatcccaaacctggaactctacgccat
gctgtcatccaggaggagcctctgtggattgtgttcaagagggatatggttatagagctg
aaacaggagctgatcatgaacagtttcaagaccattgatggccgtggctccaatgtccat
atagccaatggtgcttgcatcaccattcagtttataaccaatgtcatcattcatggactt
catattcatgattgcaagcctactggaaatgcaatggttagaagctcgccatctcacttt
ggttggaggacaatggctgatggtgatgcagtctccatttttggatcatctcatatctgg
attgatcataactctctctctcactgtgctgatggccttgttgatgctgtcatgggttct
actgctattactgtttccaataaccactttacccaccacaatgaggtgatgttgcttggg
cacagtgactcgtacacaaaagataagctaatgcaagtgaccattgcttacaaccatttt
ggagaaggactagttcagagaatgccaaggtgcagacatgggtatttccatgtggttaac
aatgactacacacactgggagatgtacgccattggtgggagtgcagagccaaccatcaac
agtcaaggaaacagatatgctgctccaatggaccgcttcgccaaagaggtgacgaaaaga
gtggagacagatgcaagtgagtggaagaagtggaattggaggtcagaaggagaccttcta
ctgaatggagcattcttcaggccatcaggagcaggagcatcagctagctatggaagagca
tcaagcttagcagctaaaccatcatctatggtcgacactattacctctactgcaggagca
ctaggttgccgtaagggcagaccttgttag
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