Arabidopsis lyrata (lyrate rockcress): 9304680
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Entry
9304680 CDS
T01578
Name
(RefSeq) RNA-binding protein NOB1
KO
K11883
RNA-binding protein NOB1
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
9304680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aly03009
]
9304680
03051 Proteasome [BR:
aly03051
]
9304680
Ribosome biogenesis [BR:
aly03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
9304680
Proteasome [BR:
aly03051
]
Eukaryotic proteasome
Assembling factors
Other assembling factors
9304680
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PIN_6
Zn_ribbon_NOB1
DUF4831
Motif
Other DBs
NCBI-GeneID:
9304680
NCBI-ProteinID:
XP_020874841
LinkDB
All DBs
Position
Unknown
AA seq
614 aa
AA seq
DB search
MDPKPTSMWSSIVKKDPPSKPPVNDGAPAAILGMVGNCKSTKGISMAVVDANAVIEGGQS
LTNFADRFVTVPEVLSEIRDPASRRRLSFIPFTIDTMEPSPESLSKVIKFARATGDLQTL
SDVDLKLIALSYTLEAQVHGTKNLRDVPPPIQTVRVKRLPEKDLPGWGSNVSNLDEWEAL
ENETEEQSNANSKILPLKDLNMNIIASDNVSEIGSVVSHTENHEVDEQEGEKKHRRYPPK
KTEIKLEGKMVVKGIDASQGQYDDDDDDASDWRPAVSRSTHRRFLRRKATWEHHNALAEQ
EIQQDQEADKARHMIEDTADLHQQSNQMSKDPNENHAKDSGKGGEDLSSILKDMRLEEDS
LRALHEGTEETNAEATLINGEDDIEVEAEGIDGTNQALENSEIASEAGDTFEASSIADDG
SSEQSWSLRALSESSVACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACYTV
TPEIGRIFCPKCGNGGTLRKVAVTIGENGAIIAACKPRIILRGTQYSIPMPKGGREAITK
NLILREDQLPQKFLHPRTKKKASKPGDEYFVSDDVFLNHHSDRKAPLQPPVRKAMSVFSQ
KRNPNDNHYSRSMH
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggatccgaaaccaacctcaatgtggagttctattgtgaagaaagatccaccttcaaag
cctccggttaacgacggagctccggcagcgattctcggtatggtcggaaactgcaaatcc
acaaagggaatatctatggctgttgttgatgccaacgccgtcatcgaaggaggccagagc
ttaacaaacttcgccgacagattcgtaaccgtccctgaagtactctctgagattcgtgac
cctgcttctcgccgtcgtctctctttcatccctttcactattgataccatggaaccttct
cctgaatctctcagtaaagttatcaaatttgcaagagctactggtgatttgcaaactctg
tctgatgttgatctcaaattgattgctttgtcatacacgcttgaggctcaggttcatggc
accaaaaatcttagagatgttcctccaccgattcaaactgttagagtaaagaggttacct
gagaaggatttacctggttggggctccaatgtgtctaacttggacgagtgggaggcactt
gaaaacgagactgaggaacaatccaacgctaactccaaaatccttccgttgaaagacctt
aacatgaatattatcgcttcggacaatgtttctgagattggttctgttgtctctcatact
gagaatcatgaagtggatgagcaggaaggtgagaagaagcataggcgatacccgcccaag
aaaacagagattaagcttgagggtaagatggtagtgaagggaatagatgcatcccagggg
caatatgatgatgatgatgatgatgccagtgattggagacccgcagttagtagaagtact
cacagaaggtttcttagaaggaaggcgacgtgggaacatcacaatgccttggctgaacaa
gaaattcagcaagatcaagaagctgacaaagctcgacacatgatcgaggacacagctgat
ctgcatcagcagtcaaatcagatgtctaaagaccccaatgaaaaccatgcaaaggatagc
ggaaagggtggtgaggatctatcgtccatcctaaaagatatgaggttggaggaagattca
ttaagggctctccacgaagggaccgaagagacgaatgctgaagcaactttgatcaatggt
gaggatgatattgaagtcgaagctgagggtatcgatggtacaaatcaagcgctagagaac
tcggagattgctagtgaggctggggatacctttgaggcatcatcgattgcagatgatggt
agcagcgagcagagttggtcgttgagagccttatctgagtccagtgtagcttgtataact
ggtgactatgcaatgcagaatgttattcttcaaatgggtttgcgtttgcttgcacccggc
ggaatgcaaattcgccaattgcacaggtggatcttgaaatgccatgcttgctacacagta
actcctgaaattggaagaattttctgtcccaagtgcggtaatggtggcactctacgcaag
gtagcggttacaataggcgagaatggcgccatcatagctgcatgtaaaccacgaattata
cttcgagggacccaatattcgataccaatgcctaaaggaggaagagaggcaatcaccaag
aatttgattctacgggaagatcaactccctcaaaagtttctccaccctaggaccaagaag
aaagcaagcaaaccgggtgatgagtactttgtatcagacgatgtgttcttgaaccatcat
agtgatagaaaggcaccattgcagcctccggtgagaaaagctatgtcggttttcagccag
aaaagaaaccctaatgacaaccattactctcgttctatgcactga
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