Arabidopsis lyrata (lyrate rockcress): 9304760
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Entry
9304760 CDS
T01578
Name
(RefSeq) polygalacturonase QRT2
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly00040
Pentose and glucuronate interconversions
aly01100
Metabolic pathways
Module
aly_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
9304760
Enzymes [BR:
aly01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
9304760
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Motif
Pfam:
Glyco_hydro_28
Beta_helix
Pect-lyase_RHGA_epim
NosD
Motif
Other DBs
NCBI-GeneID:
9304760
NCBI-ProteinID:
XP_020872951
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MANSAMFSTFILSLTLFHIFQLVQSHYSLYHESKSFNVLNYGAIGDGFSDDSKAFKDAWE
DTCNYIGSQSTMEIPEGYTFLLQPIEFHGPCKSKKIILSISGNLIAPESPYEWECKKDHC
HKWIEFGHINGLHINGHGTLDGQGTKWWSLDCNKYKNACLKRPRGVVISHSSNVHISNIM
VKDSPNFQMSLEDSKWVIVKQLTITADGDSPNTDGIHIQRSQNVIVYESNIRTGDDCISI
GDGSKYVNISRISCGPGHGISIGSLGRYGTKETVENVVVRDCTFRETTNGVRIKTWQGGR
GHVRNVLFERIKLHGATRPIIIDQFYCPHSQCKNHTRAVEIKNVMYNHIHGTSIKKPFVQ
LLCSKSVPCRGIFMNDINIRNENEEEEEKYHKSLSHNDHPSAECINVKGESNGVMKPKLG
CLEFKRH
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattccgcaatgttctcaacttttatcctctctttaactctcttccacattttt
cagttagttcagtctcactattctctttatcatgaaagtaaaagttttaatgttctcaat
tatggagcaattggagatggattttctgacgattcaaaggcattcaaggatgcatgggaa
gacacatgcaattacattggatctcaatcaactatggaaattcctgaaggatacacattt
cttctgcaacctattgagtttcatggcccttgtaaatccaagaaaatcattttatcgatc
agtggaaacttaattgctcccgaatctccatatgaatgggaatgtaagaaagatcattgt
cataaatggatcgaattcggtcatataaatggacttcatattaatggtcatggtacactt
gatggtcaaggaacaaaatggtggtctctagattgcaacaaatataaaaatgcatgtctc
aagagaccaaggggtgtggttatatcacattcgagtaatgtgcatataagcaacattatg
gtgaaggacagtccaaattttcaaatgtcgctggaagattcaaaatgggttattgttaag
caactcaccataaccgctgatggtgatagccctaacactgatggcattcacattcaacgt
tctcagaatgttatcgtatacgaaagtaacatccgtacaggtgatgattgtatatctatt
ggtgacggctcaaaatacgttaatatatcacgaatctcatgtggtccggggcatggaata
agtatcggaagcttaggtcgatatggaaccaaagaaacagtggaaaatgttgttgttaga
gattgtacctttagagaaacaactaatggggttagaatcaagacatggcaggggggaaga
ggacatgtgcgaaatgttttatttgaacgtataaagctacatggggcaacacgacctatc
attatcgaccagttttattgtcctcactcacaatgcaaaaaccatactagagctgtggag
atcaagaatgtaatgtacaatcacatacatggaacatcaatcaagaaaccctttgtgcaa
ctcctatgcagcaaatcagtcccatgtagaggtatattcatgaacgatataaacattcgc
aacgaaaacgaagaagaagaagagaaataccataaatcattgtctcataatgatcatcct
tctgctgaatgcatcaatgttaaaggtgaatctaatggtgtaatgaagccaaaactaggt
tgcttggaattcaaaagacattga
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