Arabidopsis lyrata (lyrate rockcress): 9304905
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Entry
9304905 CDS
T01578
Name
(RefSeq) histone deacetylase 19 isoform X2
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03082
ATP-dependent chromatin remodeling
aly03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
9304905
03083 Polycomb repressive complex
9304905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aly03036
]
9304905
Enzymes [BR:
aly01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
9304905
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
9304905
HDAC complexes
Sin3A-HDAC complex
9304905
BRAF-HDAC complex
9304905
REST complex
9304905
SHIP complex
9304905
MiDAC complex
9304905
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
9304905
Heterochromatin formation proteins
Other heterochromatin formation proteins
9304905
Chromatin remodeling factors
NuRD complex
9304905
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
9304905
NCBI-ProteinID:
XP_002868833
UniProt:
D7MEW2
LinkDB
All DBs
Position
Unknown
AA seq
500 aa
AA seq
DB search
MDTGGNSLASGPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQ
VLKPFPARDRDLCRFHADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPVFDGLYSFCQT
YAGGSVGGSVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLY
VDIDIHHGDGVEEAFYATDRVMTVSFHKFGDYFPGTGHIQDIGYGNGKYYSLNVPLDDGI
DDESYHLLFKPIMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFN
VPLLLLGGGGYTIRNVARCWCYETGVALGVEVEDKMPEHEYYEYFGPDYTLHVAPSNMEN
KNSRQMLEEIRNDLLHNLSKLQHAPSVPFQERPPDTEAPEVDEDQEDGDKRWDPDSDMDV
DDDRKPIPSRVKREAVEPDTKDKDGLKGVMERGKGCEVGVDESGSSKVTGVNPVGMEEAS
VKMEEEGTNKGGADQVFPKI
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atggatactggcggcaattcgctggcgtccggacctgatggtgtgaagaggaaagtttgt
tatttctatgaccctgaggtcggcaattactactatggccaaggtcaccccatgaagccc
catcgcatccgcatgacccatgcccttctcgctcactacggtctccttcagcatatgcag
gttctcaagcccttccctgcccgcgaccgtgatctctgccgcttccacgccgacgactac
gtctcctttctccgcagcattacccctgaaacccagcaagatcagattcgccaactcaag
cgcttcaatgttggtgaagactgtcccgtctttgacggcctttattccttttgccagacc
tatgctgggggctctgttggtggctctgtcaagctaaaccacggcctctgcgatattgcc
atcaactgggctggtggtctccatcatgctaagaagtgcgaggcctctggcttctgttac
gtcaatgatatcgtcttagctatcctagagctccttaagcagcatgagcgtgttctttat
gtcgatattgatatccaccacggggatggagtggaggaggcattttatgctactgacagg
gttatgactgtctcgttccataaatttggtgattactttcccggtacaggtcacatacag
gatataggttatggtaacggaaagtactattctctcaatgtaccactggatgatggaatt
gatgatgagagctatcatctgttattcaagcccatcatggggaaagttatggaagttttc
cgaccaggggctgtggtattgcagtgcggtgctgattcattgtctggtgataggttgggg
tgctttaatctttcgatcaaaggtcatgctgagtgcgtcaaatttatgagatcgttcaat
gttcccctactgctcttgggtggtggtggttacaccatccgcaatgttgcccgttgctgg
tgctacgagactggagttgcacttggtgttgaagttgaagataagatgccggagcatgaa
tattatgaatattttggtccagactatacacttcacgttgctccaagtaacatggaaaat
aagaattctcgtcagatgcttgaagagattcgcaatgaccttctccacaatctctctaag
cttcagcatgctccaagtgtgccattccaggaaagaccaccagatacagaggctcccgag
gttgatgaagaccaagaagatggagataaaagatgggatccggattcagacatggatgta
gatgatgaccgtaaacctataccaagcagagtaaaaagagaagctgttgaaccagataca
aaggacaaggatggactgaaaggagttatggagcgtggcaaaggttgtgaggtgggggtg
gatgagagtggaagcagtaaggttacaggagtgaacccagtgggaatggaggaagcaagt
gtgaaaatggaagaggaaggaacaaacaagggtggggcggaccaggtgtttcctaaaata
taa
DBGET
integrated database retrieval system
