Arabidopsis lyrata (lyrate rockcress): 9304933
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Entry
9304933 CDS
T01578
Name
(RefSeq) uncharacterized protein LOC9304933
KO
K14311
nuclear pore complex protein Nup188
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
9304933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9304933
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
9304933
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
9304933
NCBI-ProteinID:
XP_020874399
LinkDB
All DBs
Position
Unknown
AA seq
1964 aa
AA seq
DB search
MANPKSVDSSLWWDPFDSLLTDLENASLSDDLPQPIAKKLEENHAWFLGTLSMFKPPSEK
SKEALNSDVVKIKEHQLVIKPQLKDKALRISSHLNLDEIQSYILVERSMEQEYGTTDSVA
QELAQEFIDMILLQYYIQRQCLLKCTKRILIHALYAPSEESTIKEEAVKLISDGLERRQS
SVLEDLFSSCFPQNMDVNLFALWAEETLIEDNLILDILFLIYNESFCSCNGERWRKLCSF
YKGILSGSYNFRKLAVSVEAQHSACRVQIQLLMILIETLDMENLLQMVHDGVPFRSGTCV
FSIVDVQEMDATISSLNTFEVKEAGPLVLAWAVFLCLISSLPGKEESPFLMDIDHVSYVH
QAFEAASLSYFLEILQSNLLNDFDGPISGHRSVVRTFISAFIASYEINLQLEDGTLELIL
DILCKVYQGEESLCSQFWDRKSFVDGPIRCLLFDLESEFPFRSAEFIRLLSSLSEGSWPA
ECVFNFLDKSVGFSTLFDITSDSPADEASQLVETSRPLHIPGLEGLVIPSNTRGRILRVI
GENTVLVRWEYSLSGVIVLIIRLANGLYIGNNREAFVTLELLRRMVTFNKAVCVSLLNIS
HFFYVHESYVNGKMESDVRVVDIICNSVRSLTFDSDGAAVMAMAIDILARLLRCSPSIAP
MVLKANIFDMTSGSGVPDSGYNISLSGSCSLSGKLAKMILIDCEKNDTSCPLVISVLEFT
MQLVEGGLENDVVFALVVFSLQYILASHEYWKYNNGSMRWKVTLKVIEVMKTCLRFSKFS
TKLRDVLLDILLNDASVHSALFRIICTTTQNLENLCSSRFIEPAEIEGWQLAIVSVLDVL
NVTLSQFSESTHSGLPVFHQAMLSSTTKPISVVAAITSLISYFRNPIIQVYAAQVLSKLF
ALAESSQLYIISNAGFGLDNKQITDLRNSVTQIILDLSGQNEDLVVATLKLLTVAARYQP
ALLVAIFDSDEDSDAGNLKQSRKDASSIPDWACKSRLLHTILQYVERATDFVDRYTDILL
GLLDFLKTLWQEAGQYANMLEPFKASKKLWQEFSNIISQASKIKDSTVGSLGKEEISKLF
VKYQCQASVLEIMACNMFLYKKLLFAESLKKPCVEPKKTSNNAVSPPKLTWTADSDPKDI
FSKWCDVSVLDGLIQSVSSLDGESEINFQAKVAAVLLIVHLIVKLETSGAGALSMVLVEK
IKLISEILCAQPAFSELLAQYSKLGYSGGKELMPMIFSDLYCHLQGKLEGRDIPTGPFKE
LFQFLVESSFWEKDKQETNKDVNMALEDCLFDTQQIQTELGFDIWDFSEWKTSKTTAEEM
LTYMQRANSMVLLSTSQLSVLHALISVLILYEDNSLEESAAAERIIPSRVTLSSIDIVCR
KFFTTVDSLASLWDAPKIVFDILTAQADLLSRLLKSAKKNLSLSICVLVLRNVGPSLKIL
GSLRYSNAILKKTINLLLEVLLLVVGFGSDNSNSSGMGHMVLAQDFAEISDATIGLLPLL
CNFMGNPEYLTLCLTTVDLILRTFLTPETWFPIIQSQLRLQHVILQLQDKKSTASLSAIL
KFFLTIAQVHGGAQMLLNSGFFSTLRALLMEFPDGMSTLVSDNEKGCLLEKTEKPQHIWG
IGLAVVTAMVHSLGSISAGADIVESVISYFFLEKGYMISYYLAAPDFPSDDRDKVRPRSQ
RTWTSLTYLRETEHTLLLMCALASHWRSWVKIMKDMDSALREMTIHLLAFISKGAQHLRE
SQSYTSHLLCPPVVKEEFDSCKRPSFINSKHGWFALAPLVCVGKPKISAVSISAALVIRG
HTTEHPGSVPQSQFSDSVAIQIYRVASLLLKFLCLQAEGVVTRAEEVGYVDLAHFPELPE
PEILHGLQDQFTGIVAELCDNYRSKEVPDEVKKLCLLLIQTTEMSLYLELCVVQVCRIHP
VFGRVDNFSKDLKKLVKAAEVHAYLETSMDSLKKIAVFLYPGSL
NT seq
5895 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaccctaaatccgtcgattcgtctctctggtgggatccgtttgactctcttctc
accgacctcgagaatgcatctctctctgatgaccttcctcaacccatcgcgaagaagttg
gaggagaaccacgcgtggttccttggaactctgtcgatgttcaagccaccgagtgagaaa
tcaaaagaagctttgaattcggatgtcgtcaaaattaaggagcaccagttggtgataaag
ccccaattgaaagataaagcccttcgaatcagctctcatctgaatctagatgaaatccaa
tcatacatcctcgtggaaagatctatggagcaggaatatggaaccactgactcggtagct
caagaattagctcaagaattcatagacatgatactgcttcagtattacatacagcgccag
tgcctactaaagtgtacaaagcgtattctcatacatgcattatatgcgccaagtgaggaa
agtacaattaaggaagaagctgtaaagctgatctcagatgggcttgaaagacgacagtca
tcagttctcgaggacctgttttcctcttgttttccacagaatatggatgtcaatctattc
gctttgtgggcggaggagacactaattgaggacaatttgattttggatattcttttcctt
atttacaatgaatcattttgctcttgtaatggagaaagatggagaaaactgtgttctttc
tacaaggggattctttcaggttcatataattttagaaagctggctgtgtcagttgaagca
caacattctgcatgtcgagttcaaattcagttgctgatgattcttatagaaacgttggat
atggagaatctgttacaaatggttcacgacggagtacctttcaggtctggcacttgtgtc
ttttccattgttgatgtccaagagatggatgcaacaatctcaagcctcaacacttttgaa
gtaaaagaagcaggacctctcgtcctggcttgggcagtatttctgtgtcttatttcatca
cttcctgggaaggaggaaagtcctttcctgatggatattgatcacgtgagctatgttcat
caagcttttgaggcagcatccttgagctatttccttgaaatccttcaaagtaatctattg
aatgattttgatggaccaatctctggtcatcgtagtgtcgtgaggacttttatttcagca
tttattgcatcttatgagatcaatcttcagctggaagatggcaccctcgagttgatactg
gacatcctctgtaaggtttatcaaggagaggagtccctctgtagtcagttttgggatcga
aaaagttttgttgatggccctatccggtgtctcctctttgatctggagagtgaatttcca
ttcagaagtgctgaattcattcgtctcttgtcgtccctgagtgaaggaagttggcctgct
gaatgtgtattcaactttctggataaatcagtcgggttttcaaccttatttgatattact
agtgactctccagcggatgaggcctctcaacttgttgaaacttcccggccgttgcatatt
ccaggtcttgaaggtttagttattcccagtaatactcgtgggcgaattctgagagtaatc
ggtgaaaatactgtccttgtacggtgggaatattcgctatccggcgtaattgtgttgatc
atccgtttggccaatggactctacattggtaacaatcgtgaagcttttgtgactctggag
ctacttcgtcggatggtgacatttaacaaggccgtatgtgtctccttactgaatatcagc
cacttcttttatgttcacgaatcttatgtgaatgggaagatggaaagtgatgtgagggtg
gttgatataatttgcaattcagtcagaagcctgacttttgactctgacggtgcagctgtg
atggcaatggctattgatatcttagctagacttctgcgatgttccccgtcaattgcgccc
atggtcttaaaggcaaatatatttgacatgacttcaggttcaggcgtccctgacagtggc
tacaatatttcattgagcggttcttgctctctctctgggaaacttgcaaagatgatcttg
attgactgcgagaagaatgatacaagctgcccattggtcatatcagttctggaatttacc
atgcaacttgtggaggggggactagagaatgatgtagtttttgctctagttgttttctcg
ttgcagtatattcttgctagccatgagtattggaaatacaacaatggaagtatgcgttgg
aaagtgacactaaaggtcattgaggtgatgaaaacgtgtctcagattcagtaaattctcc
acaaagctgagggatgttctccttgatattttactgaacgatgcctctgttcacagcgct
cttttccgaatcatttgtacgactacacaaaatttagagaacctttgttcaagccgtttt
attgaaccggcagagattgaaggatggcaacttgctatagtctctgttttggatgttttg
aacgtcacactctcccaattttctgagagtactcattctggtcttcctgtgtttcatcaa
gccatgctgtcgtctacaacaaaaccaatctcagttgttgcagctatcacatcactgatt
tcttacttccgcaatcctattatacaggtttatgctgctcaagtgctgtcaaagttattt
gccttggcagaatcatcacagctctatataataagcaatgcaggctttggtctagacaat
aaacagattacagatttaagaaattcggttacccagatcatacttgatctatcgggacaa
aatgaagatcttgtcgttgccaccttgaaactactaactgttgcagcaagatatcagcct
gctcttttagtggccatatttgattcagacgaagactcagatgctggcaacttaaaacag
tcacgcaaagatgcctcctcaattcctgactgggcttgtaaatctcgcttattgcacact
atcctgcaatatgtagagagagcaacagattttgtcgatagatacacagatatattactg
ggtttacttgatttcctgaaaaccctttggcaagaggctggccaatacgctaatatgctg
gaaccgtttaaggcgtcaaaaaagttgtggcaggaattttccaacattatatcacaggcg
tctaagataaaagattccacggttggaagtttaggcaaggaagagatctcgaaattgttt
gtgaaatatcagtgtcaggcttctgttttggaaattatggcttgcaacatgtttttgtac
aagaagttgctgtttgcggagtcacttaaaaagccatgtgtggagccaaaaaagacgtca
aataatgcagtatctccacccaaattaacttggacagctgattcagatcccaaggatatt
ttttcaaaatggtgtgacgtatctgttttggatggccttatccagtcagtttcttcctta
gatggtgaaagtgaaataaacttccaagcaaaggttgctgccgttttacttattgtgcat
ttgattgtgaaactggaaacatctggcgcaggagcattgtctatggttttagttgagaag
atcaaactcatatcagaaattctttgtgcccaacctgctttttctgagttgttggcgcaa
tattcaaaacttggttatagtggaggaaaggagttgatgcctatgattttcagcgatcta
tactgtcatctacaaggaaaacttgagggtcgtgatatcccaactggtccattcaaagag
cttttccagtttcttgttgagtcgagcttttgggagaaagataaacaggaaactaataag
gatgtaaatatggctttggaggactgtttgtttgacactcagcaaatacagactgaatta
ggttttgatatttgggatttctctgagtggaagacatctaaaacaactgcagaggaaatg
ttgacttacatgcagagagcaaattcgatggttttactctcaacttcgcagctctctgtt
ttgcatgcattgatttccgtcttgatactttacgaggataattctcttgaagaaagtgca
gctgcagaaaggataatcccttctcgagtcactctttcaagcattgatatagtatgccga
aaattcttcaccacagttgattcacttgcctctctctgggatgcacccaagattgtgttt
gatattcttacagcacaggcagacttgctatcccgcctcttgaaatccgcaaagaaaaat
ctttcattatctatatgtgtacttgtcctgagaaatgtggggcctagcctcaaaatccta
ggtagtttgaggtattcaaatgctatattgaagaagacgataaacctcctgcttgaggtg
ctgctcctggttgtgggttttggttcagacaactccaactcgagtgggatgggacatatg
gtgctagcccaagattttgcagaaatatctgatgctacaattggattattaccccttctc
tgcaacttcatggggaatcccgagtacttgactctctgcctgaccacagtagacttgatt
ctcagaacttttttgacgccagagacatggttccctattatacaaagtcaactccgcttg
cagcatgttattctacagcttcaggataagaaatccacagcatcgctttcagcaatacta
aaatttttcttaactattgctcaagttcatggtggtgctcagatgcttctaaattctgga
tttttctcgactttaagagctttgttaatggagtttccggatggaatgtctactttggta
tctgacaatgaaaagggctgtctgctagaaaagacagaaaaacctcagcatatctgggga
atcggtttggctgtggttactgccatggttcattctctaggatctatttctgcaggggct
gatattgtggagagtgtcatatcttactttttcttagagaaaggttacatgatctcatac
tatctcgctgcaccagatttcccttctgatgatcgtgacaaagtgagaccacgaagtcag
cggacgtggacttcccttacttatctgagagaaaccgagcatactctccttctgatgtgt
gcattagctagccattggagatcatgggttaaaattatgaaggatatggattctgcatta
agagaaatgacaatacatctcttggcctttatcagcaaaggtgctcaacaccttagagag
tctcagagttacacatctcatctgttatgccctccagtagtaaaagaagagtttgattcc
tgcaaaagaccatctttcatcaacagcaagcacggatggtttgccctagcacctttagtt
tgtgttgggaaacccaagatctctgcagtatcaatctcggctgctctagttatcagggga
cacactacagaacatcctgggtctgttcctcaatcgcagttttcagactcagttgcgata
cagatatatagagtggcttctctattgttgaaatttctgtgtttacaagcagagggtgtt
gttacaagggcagaggaagtgggatatgtcgatcttgctcatttccctgagcttccagag
ccggagattttacatggtctacaggaccaattcacgggaatagttgctgagctttgtgat
aattacagatccaaagaggttccagatgaagtaaagaagttgtgccttttgctgatccaa
acgacagagatgtcgttatacttggaactctgtgttgttcaggtttgcaggatccatcct
gtatttgggcgtgtggataacttctccaaagacttgaaaaagctagtgaaagctgctgaa
gtgcatgcgtacttagaaacgtccatggattcactgaagaaaatagctgtgtttctgtat
cccggatcgctttag
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integrated database retrieval system
