Arabidopsis lyrata (lyrate rockcress): 9304935
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Entry
9304935 CDS
T01578
Name
(RefSeq) pre-mRNA-processing-splicing factor 8B isoform X1
KO
K12856
pre-mRNA-processing factor 8
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9304935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
9304935
Spliceosome [BR:
aly03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
9304935
Complex C
U5 SnRNP specific factors
9304935
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
U5_2-snRNA_bdg
PRO8NT
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
9304935
NCBI-ProteinID:
XP_020873107
LinkDB
All DBs
Position
Unknown
AA seq
2264 aa
AA seq
DB search
MPPEHVRKIIRDHGDMSSKKHGLDKRVYLGALKFVPHAVFKLLENMPMPWEQVRYVNVVP
WVVEPIYMAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQL
ELDEEDDSALYSWFYDHKPLVKTKLINSPSYQTWNLSLPIMSTLHRLAAQLLSDLVDRNY
FYLFDMPSFFTAKALNMCIPGGPKFEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRV
AFPHLYNNRPRKVKLCVYHTPMIMYIKTEDPDLPAFYYDPLIHPISNSSNTNKEHRKSNG
YDDDEDDFVLPEGVQPLLNNSPLYTETTAAGISLLFAPRPFNMRSGRTRRAEDIPLVAEW
FKEHCPPAYPVKVRVSYQKLLKCYVLNELHHRPPKSQKKKHLFRSLAATKFFQSTELDWV
EVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREI
LRVTKLVVDANVQFRLGNVDAFQLADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKH
LIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAK
TVTKQRAESHFDLELRASVMHDVVDAMPEGINQNKARTILQHLSEAWRCWKANIPWKVPG
LPVAIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQER
QHNFQKDGPYVTADEGIAIYSTTVNWLESRKFSPIPFPPLSYKHDTKLLILALERLKESY
SAAVRLNQQQREELGLIEQAYDNPHEALMRIKRHLLTQHSFKEVGIEFMDLYSHLIPVYQ
IDPLEKITDAYLDQYLWYEGDKRHLFPNSIKPADSEPPPLLVYKWCQGINNLQGIWDTSD
SQCVVMLQTKFEKLFEKIDFTVLNSLLRLVLDHKLANYVTGKNNVVLSYKDMSYTNTYGL
IRGLQFASFVVQFYGLVLDLLLLGLTRASEIAGPPQRPNEFMTYWDTKVETRHPIRLYSR
YIDKVHIMFKFTHEEARDLIQRHLTERPDPNNENMVGYNNKKCWPRDAWMRLMKHDVNLG
RSVFWDMKNRLPRSITTLEWENGFVSVYSKDNPNLLFSMCGFEVRMLPKIRMGQEAFSST
RDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIG
LMTYFREATVHTQELLDLLVKCENKIQTRVKIGLNSKMPSRFPPVIFYTPKEIGGLGMLS
MGHILIPQSDLRYSKQTDVGVSHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQLVWAEY
ALKRQEAQTHNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQSLK
QNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGF
EESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTL
KISLIQIFRAHLWQKIHESVVMDLCQVLDQELDPLEIETVQKETIHPRKSYKMNSSCADV
LLFAAYKWPMSKPSLVAESKDMFDQKASNKYWINVQLRWGDYDSHDIERYTRAKFMDYTT
DNMSIYPSPTGVIIGLDLAYNLHSAFGNWFPGSKTLLAQAMNKIMKSNPALYVLRERIRK
GLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGVIFI
FNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQVIVTRKGML
DPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLMTVSS
YTAFQRLILILRALHVNNEKAKMLLKPDMSVVTEPNHIWPSLTDDQWMKVEVALRDLILS
DYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAEIEKQSKQASQLTAVTTRTTNV
HGDELISTTISPYEQSAFGSKTDWRVRAISATNLYLRVNHIYVNSDDIKETGYTYVMPKN
ILKKFICIADLRTQIAGYLYGISPPDNPQVKEIRCVVMVPQWGNHQQVQLPSSFPEHQFL
DDLEPLGWMHTQPNELPQLSPQDVTFHSRVLENNKQWDGEKCIILTCSFTPGSCSLMSYK
LTQAGYEWGRLNKDAGSNPHGYLPTHYEKVQMLLSDRFFGFYMVPDNGPWNYNFMGVNHT
VGMNYSLKLGTPKEYYHQDHRPTHFLEFSNMEEDGDLDREDTFA
NT seq
6795 nt
NT seq
+upstream
nt +downstream
nt
atgccacctgagcacgttaggaaaatcatcagggatcatggtgatatgtcatctaagaaa
catggacttgacaaacgtgtatatcttggagcacttaagttcgttcctcacgcagttttc
aagctcctggagaatatgcctatgccctgggaacaggtccggtacgtgaacgtggtacca
tgggttgtggaacctatttacatggctcagtggggttctatgtggataatgatgagaaga
gagaagagggatcgtcgtcatttcaagagaatgcggtttccaccatttgatgatgaggag
ccccctctagactatgctgataacctgctggacgtggatcctcttgagccaattcagttg
gagctagacgaggaagatgattctgctctatactcttggttttacgaccacaagccactt
gtaaaaacaaaactgatcaatagtccaagttaccagacgtggaatctctcacttccaatt
atgtcaacccttcacaggcttgcagcccagttgttgtctgatttggttgatcgcaactac
ttctacttgtttgacatgccatcattcttcacagcaaaggcactgaacatgtgcatacca
ggcggtcctaagtttgagcctttgtatcgtgatatggagaaaggagatgaggactggaat
gaatttaatgacatcaacaagcttatcattcgatcccctctgcgaactgagtaccgagta
gctttcccccatctgtacaataataggcccaggaaagtaaaactctgtgtctatcacact
cctatgattatgtacataaagacagaggatcctgatcttcctgcgttttattatgatcca
ttaattcacccaataagtaactcgagtaacactaataaggaacatcgcaaaagtaatggt
tatgatgatgatgaggatgactttgtgttaccagaaggagtgcaacctttgctgaataac
tccccactctacactgaaactacagctgctggcatttcattgttgtttgcccctcggcct
ttcaatatgaggtctgggaggactcggcgggcagaagatataccccttgttgcagaatgg
tttaaggagcactgtcctccagcatatcctgtcaaagttcgggttagttaccagaagctt
ttgaagtgttatgtactcaatgagctgcaccatagaccacctaagtctcagaagaagaag
cacttgttccgatctcttgcagctacaaagtttttccagagcaccgaactggattgggtt
gaagtgggtctgcaagtctgccggcagggatataatatgctgaacctgttgattcacagg
aagaatttgaactacctgcaccttgattataacttcaacctgaagcctgtgaaaactctg
acaaccaaggaacgaaagaagtcacgttttggaaacgctttccatctctgccgtgagatc
ctccgggtgacaaagcttgtagttgatgcaaatgtccagttccgacttggtaatgttgat
gcctttcaattggctgatggcctgcaatatattttttcccatgttgggcaattgacaggt
atgtatcgttataagtacaggcttatgagacaaatcaggatgtgcaaggatttgaaacac
ttgatctattaccgtttcaatactggtcctgtgggtaaaggaccagggtgtggattttgg
gctccaatgtggagggtatggttgtttttccttcgcggaatagttcctcttctagaacga
tggttagggaacctgcttgcacgtcaatttgaggggcgtcactcaaagggagtggccaaa
acagtcacaaaacagagagctgaaagccattttgatttggagcttcgagcttctgtcatg
catgatgtcgttgatgcaatgccagagggtatcaatcaaaataaagcgcggacgatattg
cagcaccttagtgaggcatggcggtgttggaaagctaatataccatggaaggtccctgga
ttacctgtggcaattgagaatatgatcctccgatatgtcaagtctaaagctgattggtgg
acaaatgttgctcactacaatcgtgagcgtatcagaagaggggctactgttgataagaca
gtttgtagaaagaatcttggacggttgacccgtctttggctcaaggcagaacaggaacga
caacataattttcagaaagatggtccatatgtcactgcggatgaaggaatagcaatttat
agcaccactgtaaattggctggaatctagaaaattttcaccaatcccattccctccatta
tcatataaacatgacacaaagttgcttatcttggcccttgagagacttaaagaatcatat
agtgcagctgtgagattgaatcagcagcagagagaagagcttggtttaattgaacaagct
tatgacaatcctcacgaagctttgatgcgaataaagcgtcatcttctcactcagcatagc
ttcaaagaagttggcatagagtttatggatctatatagccatttgattcccgtctatcaa
attgatcccctggagaaaattactgatgcttatcttgatcaatatttgtggtatgagggt
gacaagcgccacttgtttcccaactcgattaagcctgcagactcagagccgccaccgctt
ctggtttacaaatggtgtcaaggtatcaataatttgcaaggcatatgggacacaagtgat
agtcagtgtgtggtgatgctccagacgaagtttgaaaaactctttgagaagattgatttt
acagtgttgaacagccttcttcgtttggttcttgatcataagcttgcaaactatgtgact
ggcaagaataatgtggttctgtcttataaggatatgagctatactaatacatatggactc
attaggggactgcagtttgcatcgtttgttgttcagttttatggactagtgctagatctt
ttgctccttggtttgactcgagcgagtgaaattgccgggccaccgcagaggcctaatgag
tttatgacctattgggatacaaaagttgagactcgccatcccataagactgtattctcgg
tatatagacaaagtgcatataatgttcaaatttacccatgaagaggctcgggatcttatt
caacgtcatctcaccgagcgtcctgatcctaataatgaaaacatggtgggatataacaat
aaaaagtgctggccaagagatgcatggatgaggttaatgaaacatgatgtcaatcttggt
agaagtgtcttctgggatatgaaaaatcgtcttcctcgaagcatcacaaccttggagtgg
gagaatggcttcgtctccgtgtacagcaaggataatccaaacttgcttttcagcatgtgt
ggatttgaagtccgcatgcttccaaaaattaggatgggccaagaagctttcagcagcaca
agggatggtgtctggaatctgcagaatgaacaaactaaagagaggactgcagttgctttt
ctgcgggttgatgatgaacacatgaaggtgtttgagaatcgtgtgaggcagattcttatg
tcgtcagggtcaacaacatttaccaaaatcgtcaataaatggaatacagctctgataggc
ctcatgacttacttccgtgaagccactgtgcatacgcaagagctcttggatctgcttgtt
aaatgtgaaaataaaatccaaacgagggttaagattggactgaactcaaagatgcctagt
cgatttcctcctgttatcttctacactccaaaggaaattggcgggcttggaatgttgtcg
atgggtcatattttgatcccacaaagtgaccttcggtacagcaagcaaacagatgttggt
gtaagccatttcaggagtggaatgagccacgaggaagatcaactgattcctaatctttac
cgttacatacaaccatgggaaagcgaatttattgattcacagctggtgtgggcagaatat
gctttaaagaggcaggaagcacagacccataatagacgtctgacgttggaggatctggaa
gactcttgggataggggaattccgcgtataaatacgctgttccagaaggataggcacact
ttagcatatgataaaggttggagggtccggaccgacttcaaacagtaccaatccctgaaa
caaaatcctttctggtggacacaccagaggcatgatggtaaattgtggaacttgaataat
taccgaactgatgtcatccaagctcttggaggtgttgagggtattcttgaacacacctta
tttaaaggaacatactttccaacgtgggagggtcttttttgggagaaggcatctggtttt
gaggagtctatgaaatataagaagctgacaaatgcgcagaggtctggtctgaaccagatt
ccgaatagaagattcacgctttggtggtcaccaacaattaatcgagcgaatgtatatgtg
ggttttcaagtgcagttggatttgacaggaatatttatgcacggaaagattcctactctt
aaaatatctttgattcagattttccgtgcccatttgtggcaaaagatccatgagagtgtt
gttatggacctttgccaagtactggatcaagagttggatccgttggagatagaaactgtg
cagaaagagacaattcatccacggaagagttacaaaatgaatagctcttgtgctgatgtt
cttctttttgctgcctataaatggccaatgtctaagcctagtctagtggctgagtcaaag
gatatgtttgatcagaaagcaagtaacaagtattggataaatgtgcaacttcgatgggga
gattacgactcccatgatattgaacgctatactagggccaaattcatggattacacaacg
gacaacatgtctatctatccatctccaacgggtgtaattattgggcttgatttggcctat
aacttgcattctgcctttggtaattggttccctggttcaaaaactctgcttgctcaagct
atgaacaagatcatgaagtccaatcccgctctatacgtgttgagagagaggataaggaaa
ggtttgcagctgtactcatctgagcctacagagccatatttgtcatctcaaaactatggt
gaaatattcagcaatcaaatcatatggttcgttgatgataccaatgtataccgtgtcaca
atccacaagacatttgaaggaaatctaacaacaaagccaatcaatggtgtaatttttatt
ttcaacccaagaacagggcaactattcctaaaggtcattcatacaagtgtttgggctggg
cagaagcgccttggtcagctagcgaaatggaaaactgctgaagaggttgcggcacttgtg
cggtctctccctgttgaagaacaaccaaaacaagttattgtgactcgtaaaggaatgttg
gatccccttgaggttcatctgttggatttcccaaacattgttataaagggaagtgaactc
cagcttccgttccaggcttgtcttaagatagaaaaatttggtgatctgattttgaaggcc
acagagccacagatggtcctcttcaatatctatgatgattggttgatgactgtttcttcg
tacactgcctttcaaagactcattctgatccttcgcgctcttcacgtaaacaatgagaag
gcaaagatgttattgaagcctgacatgtctgttgtcactgagccaaatcacatctggccc
tctctcactgacgaccaatggatgaaggtggaggttgctcttagagatctcatcctttct
gactacgcgaagaaaaacaacgtgaatacgtcagctctgacacagtcagagatcagagat
ataatacttggagcggagattactcctccgtctcagcagaggcaacagatagctgagatt
gagaaacagtcaaagcaagcgagccagcttactgcagtcacaacaagaaccacaaatgtt
catggtgatgaattgattagcaccaccattagtccgtacgagcaatctgcatttggatcc
aaaacagactggcgtgtgcgcgcaatttcagctactaacctctacctcagggtcaaccac
atctacgtgaactcggacgacataaaggaaactggatacacctacgttatgcccaagaac
atattgaagaagttcatatgcatagcggatcttcgaactcaaattgctggatatttatat
gggataagtccgccggataatcctcaagtgaaggaaatccgttgtgttgtgatggtgccg
caatggggaaatcaccagcaagttcaactgccgtcgtcttttccggaacatcagttcttg
gatgatttagagcccctgggatggatgcacacacagcctaacgagcttcctcagttgtca
ccacaggatgtgacttttcactcccgtgttctggagaataacaagcaatgggacggagaa
aaatgcatcatcctgacatgtagtttcactccgggctcatgctctttgatgtcatataag
ctgacgcaagccgggtatgaatggggacggctgaacaaagacgcaggcagcaatccccac
ggttaccttcccacccactatgagaaggttcagatgctcttgagtgaccgtttcttcggg
ttctacatggttcctgataacggaccctggaactacaacttcatgggagttaatcacacg
gtgggcatgaactatagcttgaaacttggaacccccaaggagtactatcaccaagaccat
cgacccactcatttcctcgagttcagcaatatggaggaggatggtgaccttgatcgtgag
gacacttttgcttaa
DBGET
integrated database retrieval system
