Arabidopsis lyrata (lyrate rockcress): 9305028
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Entry
9305028 CDS
T01578
Name
(RefSeq) uncharacterized protein LOC9305028
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
9305028
Enzymes [BR:
aly01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
9305028
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
Y_Y_Y
Motif
Other DBs
NCBI-GeneID:
9305028
NCBI-ProteinID:
XP_020872683
LinkDB
All DBs
Position
Unknown
AA seq
691 aa
AA seq
DB search
MVKFSKSTKMDKELENGSPGVKVGRVMTQVFVLIFLLQGVRSTTSLNNLNVTKPGQKQSP
PVTLRKVGHNQVVVDNGIIQVSFSSPAGLITGIKYNGFNNVLNDQIENRGYWDVVWYKPG
QKSLTDFLVGEKFNIVNQTSEHVEISFSRTWNISQHTSGAPLNVDKRYIIRSGVSGVYMY
AVLERLKGWPDVNMDQTRIVFKLNTTKFDYMAISDGRQKIMPSATDRDIKTGRASPLAYK
EAVHLINPQNHILKGQVDDKYMYSMENKDNKVHGWISADQRVGFWMITPSDEFRSCGPIK
QDLTSHVGPTILSMFTSVHYAGVDINTIYKSKEPWRKMFGPVFVYLNSASSRNLLWTDAK
RQMVSEVQSWPYDFVKSVDYPLHHQRGIVKGRIFVMERYNKSETNLFGKFAFVGLALPGE
AGSWQTENKGYQFWTRADKVGMFTIANVRPGKYSLYAWVSGFIGDYKYERDITITPGRVI
DVGRIVYEPPRNGPTLWEIGEPDRTAAEFYIPDPDPTLLTKLYLNYSNPQDRFRQYGLWD
RYSVLYPRKDLIFTTRVSDFKKDWFYAHVNRKAGNGTYKATTWQIKFNLKAVIQTRIYTL
RIALAAATTTDLVVWVNQANSKPLFITGLIGRDNAIARHGIHGLYKLYNIDVHGKLLRVG
NNTIFLTHGRNSDSFSGVMYDYLRLEGPSGV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggttaaattttctaagtcaactaaaatggacaaggaattggaaaacggatctccggga
gtgaaggtgggtcgggtcatgactcaggttttcgttctgattttccttcttcaaggtgtt
cgttccacaacgtcactaaacaatttaaacgtcacaaaaccgggacaaaaacaatctccc
ccggttacgcttaggaaagttggtcataaccaagtggtcgttgataacggtatcatccaa
gttagcttctcgagtccagcaggcttaataactggaatcaagtacaatggctttaacaat
gtgttgaacgaccaaattgagaatcgcgggtattgggacgtagtatggtataaaccagga
caaaagtcactaaccgattttttagtaggagaaaaattcaatattgtaaatcaaacaagt
gagcatgtcgaaatttctttttcgagaacatggaatatctctcaacatacctcgggagcc
ccattaaacgtagacaaaagatatatcattcgaagtggtgtgtccggagtctacatgtac
gctgtgttagagagattaaaaggttggcccgacgtgaacatggaccaaaccagaatcgtc
ttcaagcttaacacaacaaaattcgattacatggctatatctgatggtcggcagaaaatt
atgccttctgcaacagatcgagatatcaaaactggtcgtgctagtccattggcttacaaa
gaagctgttcatttgataaatccccaaaatcatatacttaaagggcaggtagacgataag
tacatgtactcgatggaaaacaaagacaacaaagtacacggttggatatcggcggaccaa
cgtgttgggttttggatgattactcccagcgatgagtttcgttcatgtgggcccatcaaa
caagatctcacttctcatgtgggacccaccattctttcaatgtttacaagtgtacattac
gcgggagtagatattaacacaatttataaaagcaaggagccatggaggaagatgtttggc
cctgtctttgtttatctcaattctgcctcttctcgtaatcttctctggaccgatgctaaa
cgacagatggtttccgaggtccaaagttggccttatgatttcgtgaagtcagtagattac
cctcttcatcaccaaagaggaatcgtcaagggtcgaatctttgtcatggagagatacaac
aaaagcgaaacgaacttatttgggaaatttgcttttgtgggattagccttacctggtgaa
gctggttcatggcaaaccgaaaacaagggatatcaattttggacacgagcagacaaagta
gggatgttcacaatagcgaatgttagaccagggaagtatagtctctacgcatgggtttct
gggtttatcggtgactacaaatatgagcgtgacattaccatcacaccaggtagggtgata
gacgtaggacgcatagtgtacgagccaccgagaaatggtccgactctgtgggagatcgga
gaaccagaccgaaccgccgcagaattctatatcccagatccggacccaacccttttgacc
aaactctatctaaattactcaaatcctcaagacagatttagacaatatggtctatgggat
cgttacagtgttttgtatcctcgaaaagatcttatttttactactagagtaagtgacttt
aaaaaagactggttctatgcccatgtcaacaggaaagctggaaatgggacatataaagca
acaacatggcaaattaagtttaatttaaaagcagtgattcaaactagaatctacacactt
cgaatagctttggctgcagccacaactactgatctagtggtttgggtcaaccaagctaat
tccaaacccctattcataactgggctaataggtcgggataacgcgatcgccaggcatggg
attcatgggttgtacaaattgtacaatatcgatgttcatggaaagttacttagggttggt
aataatactatttttcttactcatggtcggaactctgattctttttcaggtgtaatgtat
gattatcttcgtttggaaggtccttccggtgtttga
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