Arabidopsis lyrata (lyrate rockcress): 9305142
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Entry
9305142 CDS
T01578
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly00040
Pentose and glucuronate interconversions
aly01100
Metabolic pathways
Module
aly_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
9305142
Enzymes [BR:
aly01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
9305142
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
9305142
NCBI-ProteinID:
XP_002869071
UniProt:
D7MC56
LinkDB
All DBs
Position
Unknown
AA seq
395 aa
AA seq
DB search
MKTILDISILINFLCFGIVYGQNYNVLNFDAKGDGQTDDSKAFLQAWTAACGGDGDIKTL
LIPSDKTFLLQPTVFQGPCKSSSIKVQLDGAIVAPSDKVAWSDPISRMWIKFSTVSGLTI
VGSGTIDSRGSSFWELNLKASQRPTALHISKCDNLRINGITSIDSPKNHISIKTCNTVAI
SNINLFAPETSPNTDGIDISDSTNINIFDSTIQTGDDCIAINSGSSNINITGINCGPGHG
ISVGSLGAGGAEAKVSDVHVTHCTFNQTTNGARIKTWLGGQGYARNISFTDITLINTKNP
IIIDQQYIDKGKLDGEESSVAISNVKYVDFRGTSSNKNAITLKCSETTHCIDVVMDGIDI
TMANGGKPKVNCQYVDGESSDTDLMRDCFKNNTSS
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccatattggatatttcgatcttgataaattttctctgttttggtattgtgtac
ggccaaaattacaacgtactcaattttgatgccaaaggagatggtcaaactgatgattca
aaggcttttctacaagcatggactgctgcatgtggcggagacggggacataaaaacactt
cttattccttctgacaaaacatttttacttcaacctaccgtgttccaaggcccatgtaaa
tctagttcgataaaagttcagttggatggcgccatcgttgcacctagtgacaaagtcgca
tggtcggaccccatctcccgaatgtggatcaaattttcaactgtgtctggtctaacaatc
gttggttcgggaacgattgatagtcgtggttcatctttttgggagctaaatctgaaagct
tctcaacgacctacagcattacatatcagcaaatgtgacaacctgaggataaacgggata
acctcgattgatagtccaaaaaatcatatatcaatcaaaacatgtaatactgttgcaata
tcaaatataaatctttttgcacccgagacaagtcccaatacagatgggattgatataagt
gactcgactaatatcaacatatttgactctacaattcaaaccggtgacgattgtatagca
atcaacagtggaagttctaatattaacatcactggaattaactgtggacctggtcatggg
ataagtgtgggaagtctaggagcgggtggagcagaggctaaagtgagtgatgttcacgtg
actcactgcactttcaatcagacgacgaatggagctagaatcaagacatggctgggtgga
caaggatatgcaagaaacataagttttacggatattacgctcattaacacaaaaaatcca
ataataatcgaccaacaatatatagataaaggaaagcttgatggagaggaatcatcagtg
gcaattagtaatgtaaaatatgtcgattttcgcggaacatcgtcaaataaaaatgctata
acgcttaaatgtagtgaaactacacattgtatagatgttgtcatggatggaattgatatt
accatggcgaatggaggaaaacctaaagttaattgccaatatgttgatggagagtcaagt
gatactgatttgatgcgagactgttttaaaaataacactagttcttaa
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