Arabidopsis lyrata (lyrate rockcress): 9305348
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Entry
9305348 CDS
T01578
Name
(RefSeq) LOW QUALITY PROTEIN: probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly00040
Pentose and glucuronate interconversions
aly01100
Metabolic pathways
Module
aly_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
9305348
Enzymes [BR:
aly01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
9305348
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Paralog
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Motif
Pfam:
Glyco_hydro_28
Motif
Other DBs
NCBI-GeneID:
9305348
NCBI-ProteinID:
XP_002869277
UniProt:
D7MA53
LinkDB
All DBs
Position
Unknown
AA seq
483 aa
AA seq
DB search
MVTRELTNKSLIIFIPLFQKFCSNHYFYFYQGFEILLSVLLIASYHLQYGNGRMILTMKD
FISDSNSTNVDHSQAFQNAWRALCGGKGKGRAASFVIHAHETYTIQPQLLQGPCISRNIH
IQIDGTIEAPKMAKDWGSKISECWLCFEKVTGLVLTGSGVLNSHGENWWSSVGFPSRPEA
VRFFGCQNLLYKGLTQINSPRNHISIFGCTNATLSNLHLIAPANSPNTDGIDISHSQNIH
VLSSTINTGDDCVAIKGASYDINITYVTCGPGHGISIGSLGQGGASEVVQNVNVRHCTFS
GTQNGARIKTWPGGRGFVKNILYENITLINANFPIIIDQQYHQSAGATAVKVSDVTFKSF
KGTSADATAIKLDCDPTTGCDNIVMDHINIVSSSPRTPLTSYCKFAHVISRVVSIRIDCD
FRNEDSQPASSHPQPSAPSAVSPKPHTQPPLSFPFYTNFNIFLXRRIELRFGSFTLSQSF
LCH
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggtcactagagaattaacgaacaaatctttgattatttttatcccattgtttcagaaa
ttttgttcaaatcactacttttatttttaccagggttttgagatactcctctcagtgctt
ctaattgcatcataccatttacaatacggaaatggtcggatgattctaaccatgaaagat
tttatatctgattctaactctacaaatgttgatcattctcaggcatttcaaaacgcatgg
agagccttatgtggaggcaaagggaaaggtagagcagcctcatttgtaatacatgcccat
gaaacatataccatacaaccacaattgttgcaaggtccttgcatatctcgtaatattcat
attcagattgatggaacaattgaagccccgaagatggcaaaagactggggaagcaaaata
agtgagtgttggttatgttttgagaaggtgacaggtctcgttctcactggatccggtgtc
ctcaattcccatggagaaaactggtggtcttctgttggtttcccctctcgaccagaggca
gtaagattttttggatgccaaaaccttttatataaaggattaactcagatcaatagtcca
aggaatcacatatcgatttttggctgcaccaacgcaactttatcaaatcttcatctaatt
gcccctgcaaatagtccaaatactgatggcattgatatctctcattcacagaatatccat
gttttgagctcgacaatcaacaccggtgatgactgtgttgcaattaaaggtgcttcatac
gatattaacataacttatgtgacatgtggtccgggtcatggcataagtatcggaagtttg
gggcaaggaggggcatctgaggtagtacaaaatgtgaatgtcagacattgcaccttcagt
ggaacacaaaatggtgcaagaatcaagacttggcctggaggacgagggtttgtcaaaaat
attttgtacgaaaatattactctgataaatgccaacttccccatcatcatcgatcaacaa
tatcatcaatcagcaggggctactgctgtgaaagtgagcgacgtgacgtttaaatctttc
aaagggacatctgccgatgctactgcaataaaattagattgtgacccgacaacaggttgt
gataacatcgtgatggaccacatcaatatcgtttcttcatctccgagaacgccactcacc
tcgtactgcaaatttgcgcatgtaattagtcgcgttgtctccattcgcatcgactgtgat
tttcgtaatgaagattctcaacctgcgtcatcgcatcctcaaccttccgcaccatctgct
gtatccccgaaaccgcatactcaacctccactgtcctttcctttctatacaaattttaat
atcttcttatgaaggagaatcgaactcaggtttgggagtttcactctttcccaaagcttc
ctctgccactag
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