Arabidopsis lyrata (lyrate rockcress): 9305350
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Entry
9305350 CDS
T01578
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly00040
Pentose and glucuronate interconversions
aly01100
Metabolic pathways
Module
aly_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
9305350
Enzymes [BR:
aly01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
9305350
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Paralog
GFIT
Motif
Pfam:
Glyco_hydro_28
CBM_3
Sigma70_r4_2
Motif
Other DBs
NCBI-GeneID:
9305350
NCBI-ProteinID:
XP_020872450
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All DBs
Position
Unknown
AA seq
412 aa
AA seq
DB search
MKDFKTLFSVIIIISYYLEYGEGQKILSIKDFILKTNHTIIDYSQAFHEAWKGLCEDETP
NGSALVIRKNETYTLQPLIFRGPCVSSKIHIQIDGKLEGPRKPIYWKNTEKKSWLGFRDV
EGLVINGSGVLNPHGEAWWKSVSHSKRPTTISFESCTDIIYNGLTQINSPKNHISIYGCT
NATLSNLDISAPEDSPNTDGINICLSHKIQILDSSIQTGDDCVAITGGRGGSSDINITGV
ACGPGHGISIGSLGKDDETDDIVENVIVRSCSFTGTQNGARIKTWQGGQGLAKNILYENI
TLIDAGYPIIINQHYFDKSNYLKENAVKVNNITFRYFEGTSSSEIAIKLDCDETENCQNI
TMEHINITSPTPGKNLTAYCKFADVCSSFVNIDVDCNTNEDHHQPHILSPLP
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgaaggattttaaaacattgttctcagtgatcataattatatcctactatttggaatac
ggagaaggccagaaaattctaagcatcaaggattttatacttaaaactaatcacaccatc
attgattattctcaagcctttcacgaagcatggaaaggattatgcgaagatgaaacaccc
aacgggtcagctttagtgatacgaaagaacgaaacatacactttacaaccattaattttt
cgaggtccatgtgtatcttctaagattcatattcagattgatggaaaactcgaagggcca
aggaagccgatatattggaaaaacacagaaaaaaagagttggttaggtttcagggatgta
gaaggtctcgtcatcaacggctcaggagtgcttaatcctcatggggaagcttggtggaaa
tctgttagtcactctaaacgaccaacgacaattagttttgagtcctgcactgacattata
tataatggactaactcaaataaatagcccaaaaaatcacatttcaatttatggttgcacc
aatgcaactttatcaaatcttgatataagcgcacccgaagacagtccaaacactgatggt
atcaatatttgtctttcacacaaaatccaaatcttagactcctctattcaaactggtgat
gattgtgttgcaattactggtggaaggggtggttcttcagatatcaacattactggtgtg
gcatgtggtccgggccacggtatcagtattgggagtttggggaaagatgatgagacagat
gacatagtcgaaaacgtgatcgtaagaagctgtagttttactggaactcaaaatggagca
agaatcaagacttggcaaggaggacaagggttggccaaaaatattttgtatgaaaatatt
acattgatagatgctggataccccattatcatcaatcaacattattttgacaagagtaat
tacctaaaggaaaatgcagtgaaagtgaacaacataacatttaggtactttgaagggact
agctcaagtgaaattgcgataaagctagactgtgacgaaacagagaattgccaaaacatc
acgatggaacacatcaacatcacatctccaaccccgggtaaaaatctcaccgcatattgt
aaattcgccgatgtgtgtagttcatttgtcaacattgatgtcgattgtaatacaaatgag
gatcatcatcaacctcatatattgtctcctcttccataa
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