Arabidopsis lyrata (lyrate rockcress): 9305424
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Entry
9305424 CDS
T01578
Name
(RefSeq) small subunit processome component 20 homolog isoform X1
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aly03009
]
9305424
Ribosome biogenesis [BR:
aly03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
9305424
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
HEAT_EF3_N
Motif
Other DBs
NCBI-GeneID:
9305424
NCBI-ProteinID:
XP_020872516
LinkDB
All DBs
Position
Unknown
AA seq
2642 aa
AA seq
DB search
MATSADARAVKSLNNSEGRKRFVFKSFSERINDIDININGYRTLNKVKAEPSEGSTFFRD
CLVEWRELNTAEDFISFYEEMLPLVQNLGLVLVQKEKILSKLVSRLQMKARLSLEPILRL
IAALSRDLLKDFIPFLPRIVNSLVTLLKNGAHKDPEIIEQVFTSWSSIIVSLQKYLVCDI
ESILRDTSELSYYPKDYISEFMSESMSFLLRNAQDEQLEKGFKMILSEVAHPSKKAGGVG
LLYYVMRGTCGRLHSKAERVLSFLLKDSTLSFFDNFPQGPGTVVEVVSLALQRICEDLEA
EKLVVMWEYLYKKINKSISNKKSVHLSRLLSLLTAVVKIEKGRKVHDSPSLIGIVSRTVS
TFVASSETVVEGDNLSAVLDEVLQLILCTINRVNEIETVALLWAPIFALKSPSLLPFLRE
FLQKDQSVVKAFTNNILCAINNMIWESSEEVIPLLLTLCERQQTSHDMVNIISQTFESRY
ERIHEFLEENIKKVQQNIEDTGLARIDEAELAAIWGVVNCYPYFKVDSSLLFCFKKSLRQ
HLAVSDADTCSGPELMWQSLLGTALRSCYKMLGRINHSDLEEALSFAKDYKSCVQVLSPV
ADVLEFMHRPALAHDDRSKAYPELQAKKAGDAFEIFSENLRHPNKDIRLMTLRILCHFET
LSSEEIKKSLPKGNVLQLLLSVEETAHTVDTSRMLVNLISTIQKDLSAGRIHAAYVKLVL
NGMLGLLHNEFLYLWGPASECLAVLVRNYTGAVWSDFVCYLEQCQLKFETLHDHSENANQ
SMSERHTDLIGRFNSVLFPLSKSTPTATVVSQLLQILQKASSVAQSRASEILPLLLKFLG
YNSENPVSVGSYNGRVCKGEDWKRVLIQWLILLKLMKNPMSFRFSQFLNDVLQNRFLDDN
DAEIQTNVLECLLLTNDFLLPHRQRLLNLIKPKELREELTTWNLSEDIGEPHRSYIFSLV
IRILMPKVRTLKNLASRKHTSIRHRKAVLCFISQLDVNELALFFALLIKPLNIISEETMD
SFWSSGKSSLEYFQNSNFLKYFTVDTISTLSRNQKSGFLHVIQHILEVFDELRVRPFLDF
LMGCVVRLLVNYAPNVDEERNIDSLALSNATDAQSASDDKENASINHDQAGTALKQFKEL
RSLCLKIIAHVLDKYEDCDLGSKFWDLFFSAVSPLIKSFKQEGSSSEKPSSLFSCFLSMS
KSRNLMKLLCREESLVPDIFSILTVTTASEAIKSSALKFIENLLCLDNELGEDDNMICGF
LDPYIEALINSLHSLFIGDILKRKSVKYHGEREIKILKLLSKRMRDRSHVMKYLDVLLSF
LNKSVKDSDIRRDALLAIQDIISYLGMESTSKIINTVSPLLVDAELDVRLCICDLLESLA
NIDFSLDDVAKRVRDMNAISAMEVDDLDYEKIVNAYLEINAEFFFKSSEQHTMIILSQCI
YNVSSESIMLRGSAQKLLSSFIDFSASILCLEAPAHPEFGEEEVQKADVNWTGDRVLCIL
RNFILKHIGDAINRGGIIIKEWILLIREMVTKLPDAGNLSAFRSLCSEDENVDFFKAIVH
IQAHRRARAISRFANVVKDSSLPEGVVRKLLVSVFFNMLLDGQDGKDNNVKNACTEALAS
ISAHMSWTSYYALLNRCFREMNKHAKKGKILLRLICLILDKFHFAKDGYPQEAEEIRTCL
QKIVFPRMQKLMNSDSDNVNVNSSVAALKVLKLLPEDVMDSHLSSIVHKIASFLKNRLES
TRDEARLALVACLKELGLEYLQVVVNILRAILKRGSEVHVLGYTLNSILSKCLSNPTCGK
LDHCLGDLLAVVETDILGEVAEQKEVEKFASKMKETRKRKSFETLKLIAENVTFRSHGLK
LLSPVTAQLQRHLTPKIKTNLEEMLKQIAAGIEGNTSVDQGDLFLFIYGLVDDGINNRSG
LGDQVSAPPSKTSRKSRDLKETTGLFFGPKSCPHLITVFALDLLYNRMKKLKLDNTDEEL
LSKLDPFVKLLAGCLSSKYEDIVSSSLRCFTSLVKFPLPSLTSEADELKTALLTIAQSAV
SSSSPLVQSCLKLLTTLLDNKNITLSSEQLKMLIQFPIFIDLESDSSFVALSLLKAIVKR
KLVVPEIYDIANQVSKLMVNSQLESIRKKCKQILLQFMVHYTLSEKRLEQHVNFLLENLR
YEFPTGREAVLDMLHALILKFSEPNLGKQSVLDQQSQKLFIQLTVCLSNETDNEVLPRVG
AVIEVLIGRMSKDQVDSSLLYCLCWYKQQNLRAAAAQVLGFFIGAMKKTFRKHIYNTVQD
AKTILESAICASSLQLQDTVEEASLPFWKEAYYSLVMIEKMLEQFPDLRFGKDLEDIWKM
VFKFLLHPHAWLRNKSCRLLNHYFGALAGRKRPECHTFVVDSLLERPSSLFMVAVSLCFQ
LKEQPTMGNVDVDLLTANIVFAVSSLHSLIGQSDQETYNGFWSSLGEDEQVVFLKAFEVL
DSGKGRSTFLALTSGKRTENGEDDGNDIRNVLIGSLLKRMGKIALDMEAVQMRVVFNVYK
AFASQLNQEECYLYAYKILLPLYKVCEGFTGKIITDELKQLAEEVRDSIRDKSLGNKMFV
EVYSEIRNSLRRKREKKKREEKLMAVVNPERNAKRKLRLASKNKANKKRRMTSMKLSRWA
CS
NT seq
7929 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttcagctgatgctcgggcagtaaagtcgctcaacaattccgaggggcgtaag
cgatttgtgttcaagtctttttctgaaagaatcaacgacattgacatcaacatcaacggc
tataggaccttgaataaggtgaaggctgagccttcagaaggatccacatttttcagggat
tgcctcgtagaatggagggaactaaataccgctgaagatttcatttcgttttatgaagag
atgttaccacttgtccagaatttgggtttggttcttgtgcaaaaagaaaaaatcttgtcg
aaacttgtctctcgattacaaatgaaagcaagattgtctctggaacccattctcaggttg
attgctgctctatcaagagatctcttgaaggactttattcccttcttgccacgaattgtg
aactccttagtgactctcctaaaaaatggtgcccataaagatccggagattattgagcag
gtattcacatcatggtcttccataatagtgtccctgcagaagtatcttgtatgcgacatt
gaaagcattctcagggatacgtcggaattgagttattaccccaaagactatatcagtgaa
tttatgtcagaatccatgtcatttttgttgaggaatgcacaggatgagcaacttgaaaaa
ggattcaagatgatcctttctgaagttgcacatccatccaaaaaagctggaggagttgga
ttactatattatgttatgaggggtacctgtggaagactccattcaaaagctgagagagtt
ttgagcttcttgctgaaagattcaacattatctttttttgataattttcctcaaggccct
ggtacagtcgtggaagttgtgagtttggctttgcagagaatatgcgaggatttggaagca
gaaaaattagttgttatgtgggaatatctgtataagaaaataaacaaatcaatctcaaac
aaaaaatcggttcatttaagccgactgttgagtttgcttacggcggttgtaaagattgag
aaaggtcgcaaggttcacgatagcccatcactgattggaatcgtgagccgcactgtgtca
acttttgtggcttcctctgagactgttgtagaaggggataacttatctgctgtccttgat
gaagttctgcaattgatattatgcacaatcaacagggtcaatgaaatagaaactgttgct
ttgctatgggctcccatttttgccttgaagagtccaagtttgctgccttttttgcgggag
ttcctacagaaggatcaatcagtagtgaaagcctttacaaataatatattatgtgcaatt
aacaacatgatttgggagtcttctgaggaagttattcctctgttactaacattgtgtgag
aggcaacaaacaagtcacgacatggtgaacatcataagtcaaacatttgagagtagatac
gagagaattcatgaattcttggaagaaaatattaaaaaggttcaacagaatattgaggat
acgggattagctcgaattgatgaggccgagttggctgccatttggggagttgtcaactgt
tatccttattttaaagtggattcatcattattgttttgctttaaaaaaagtctcagacag
catttggcagtgtcagatgcagacacttgtagtggcccagaattgatgtggcagagctta
cttggtactgctttgaggtcatgttacaaaatgctgggaagaatcaaccacagtgatcta
gaggaagctttgtcttttgctaaagattacaagtcatgtgtgcaagtgttgtcacccgtg
gccgatgttttggaatttatgcataggcctgcattagctcatgatgataggtctaaggct
tatccagaacttcaagcaaagaaggctggagatgcttttgaaatattttctgaaaatttg
cgtcatccaaataaagatatccgtcttatgactctgaggattttgtgccattttgaaact
ttgtcgtctgaagagataaaaaaatctcttcctaaagggaatgttcttcagttattactc
tcagtcgaagagactgctcacacagtggatactagtcggatgttggtcaatttgatctct
acaatacaaaaggacctctccgctggcaggatacatgcggcatatgtgaagcttgtattg
aatgggatgttgggactattacataatgaatttttgtatttgtggggtccagcatctgag
tgtcttgctgttcttgtgaggaattacacaggtgcagtgtggagtgattttgtttgttat
ttggagcagtgccaactaaaatttgaaaccctccacgatcacagtgagaatgcgaaccaa
agcatgtcagagaggcatacagatctgattgggcgttttaattcggttctctttccactg
tctaagagcacacctactgcaacggtggtatctcagttgctacagatcttacaaaaagct
tccagtgttgctcagtctcgggcttctgaaattctccctttgttgttgaaatttctggga
tacaacagcgaaaatcctgtgagtgtcggatcatataatggccgagtttgtaaaggagag
gactggaagagggttcttatacaatggttgattttgctaaaattgatgaagaatcctatg
tcgtttcgttttagtcaatttctaaacgacgttctgcagaataggttcctggatgataat
gatgctgaaatacaaacgaatgttctagagtgccttctgttgacgaatgacttcttactc
ccacaccgccagcgtttgttaaatttgattaaaccaaaagaattgagagaagaactcaca
acctggaacttgtccgaagacatcggagaacctcacagatcttatattttttctcttgta
attcgtatccttatgccaaaagttaggacattaaaaaatttggcttcaaggaagcataca
agtatccgtcaccggaaggcagttctttgctttatatctcagctggatgttaatgaactt
gccctgttctttgcattgttgataaagcctttgaacatcatatcagaggaaacaatggac
tcgttttggagttcaggcaaaagttctctggaatatttccaaaactccaattttctgaaa
tatttcactgttgatactatatcaacattatccaggaatcagaaatctgggtttcttcat
gtcatccaacatatccttgaagtcttcgatgaactccgtgtccgaccttttctagacttt
ttgatgggatgtgttgtccggctattggtaaattatgctccaaatgttgatgaagaaagg
aacattgattctttggcactaagtaatgccactgacgcccaatcagcttcagatgataaa
gaaaatgcttcaataaatcacgaccaggctggcactgctttgaagcagtttaaagagttg
agatccttatgtctgaaaatcattgctcatgttcttgataaatacgaggattgtgatctt
ggctccaagttctgggacctcttcttttcggctgtgagtccgttaattaagagtttcaag
caggagggttctagtagtgagaaaccaagttccttgttctcgtgcttcttgtcaatgagt
aaaagccgtaatctgatgaaactcttatgtcgggaagagtctcttgttccagacattttt
tcaattctaactgtcaccacagcttcagaagctataaagtcttctgccttgaagttcata
gagaatctgctttgtcttgacaacgagttgggtgaggatgacaatatgatctgtggattt
ttagatccgtatatagaggcactgattaacagcttgcattctcttttcattggggatatt
ttgaaaaggaaatcagtcaagtatcatggggaaagagagattaaaattcttaaattattg
tcaaagcgtatgcgagatcgctcccatgttatgaagtatttggatgtcttgctgtctttc
ttgaataaaagtgttaaagattctgatatccgtcgtgacgctttgctagccattcaggac
atcatatcgtatcttgggatggagagtaccagcaagattataaatacagtctctcctcta
cttgttgatgctgaacttgacgttagattatgcatttgtgatcttcttgaatctcttgca
aacatcgacttttcactggatgatgtggcaaagcgtgtccgcgatatgaatgccatctca
gctatggaagttgatgaccttgactatgaaaagatagttaatgcttatttggagattaat
gcagagttcttttttaaatcctcagagcagcacacaatgatcatactctcacagtgtata
tacaacgtatcatcagaatccattatgttaaggggtagcgcacagaagctcttgtcttct
ttcattgatttttcagcgtcaatactttgcctagaggctccagctcaccctgaatttgga
gaagaagaggttcaaaaagctgatgtaaactggacaggagatcgtgtactgtgcattttg
agaaattttattttgaaacacattggagatgcaataaacagagggggcattataataaag
gaatggattcttttgatacgcgagatggtgaccaaacttccagatgccggaaatctttct
gcatttagatctttatgctctgaagacgagaatgtagatttctttaaagctattgttcac
attcaggcacaccgtagagcaagggcaatttcacgtttcgctaatgtggttaaagatagc
agtctgcctgagggagtagtgagaaaacttttggtctcggtctttttcaatatgttgctc
gatggacaagatggaaaagataataatgtcaaaaatgcatgcacagaagcccttgcatct
atatctgcacatatgagttggacgtcgtactatgctctcctgaatcggtgtttccgagag
atgaacaagcacgccaaaaagggaaaaattctgctgcgacttatctgcttgattttggat
aaatttcattttgcaaaagatggctacccacaggaggctgaggaaattaggacttgcctt
cagaaaattgtgttcccgaggatgcagaagctgatgaattctgattctgataatgttaat
gttaacagcagtgtggctgcgctaaaggttctaaagctactccctgaagatgtaatggac
tcacacctatcctctatagttcataaaattgccagttttttgaagaaccggttggagagc
acacgtgatgaagccagattggctctggttgcttgtttgaaagaacttgggctggagtac
ttgcaagttgtagtaaacattttacgtgctatcttaaaacgaggatctgaggtgcatgtg
ctggggtacactctcaattccatcttatcaaagtgcttgtccaatcctacgtgtgggaag
ttagatcattgtttgggtgatctccttgctgtggtggaaaccgatatccttggagaggtt
gctgaacagaaagaggtggaaaaatttgcatccaaaatgaaagaaacaagaaaacggaag
tcatttgagactctgaaattgattgctgaaaatgtaacgttcagaagccatggattaaag
ttactttctccggtcactgctcagctgcagcgccatctaactccaaagatcaaaacaaat
ctggaggagatgttaaaacaaattgcagctggtattgaaggcaatacatctgttgaccaa
ggagatctttttctttttatatatggcctagttgatgatggtattaataacaggagtggt
cttggagatcaagtgtctgcaccaccctccaaaacgagtaggaaatcaagagatctgaaa
gagactactgggttgttttttggtcccaagtcatgtccacatcttataaccgtgtttgct
ctggacttattgtataaccgaatgaaaaaattgaaactcgacaacactgatgaagagctc
ctgtcgaagttagatccatttgtcaaactgcttgctggatgcttgagttctaagtatgag
gatattgtatcttcatctcttagatgttttacttcattagtaaagtttccactgccttcc
ctcacgtctgaagcagatgaactgaaaacagcattgttaaccattgctcagtctgcagtg
agttccagcagtcctcttgtgcagtcatgccttaagctgctaacaacgcttctcgacaat
aaaaatataactttatcatctgagcagttaaaaatgttgattcagttccccatatttatt
gatctggagtctgattcatcctttgttgctctttcactcctcaaggccatcgtgaagcgg
aagcttgtagttccagagatatatgacattgcaaatcaggtttcaaagttgatggtaaat
agtcagttggaatcaatccgcaagaaatgtaaacagatactgttgcaatttatggttcac
tatacactttctgaaaaacgtttagagcaacatgtgaactttctgctggaaaatctgagg
tatgaatttccgactggaagagaagcagttcttgacatgcttcatgccctgatcttaaaa
ttttcagaacctaatcttggcaagcagtctgttcttgatcagcagtcccaaaaattgttt
attcaacttactgtctgcttgtccaatgaaactgataacgaagtgctgccccgggttggt
gctgtgatagaagttctgataggccgcatgagtaaagatcaagttgattccagtctcttg
tactgtttgtgttggtataagcagcagaacttaagggctgcggcggcacaggtattggga
ttttttattggcgccatgaagaaaacatttcggaagcatatctacaatacagtgcaggat
gctaaaactattttggagtctgcgatttgtgcttccagcttacagttgcaagatactgtt
gaggaagccagtcttccgttctggaaggaagcatactactcactggttatgatagaaaag
atgctagagcaatttcctgatttaagattcggaaaagatttagaggatatttggaaaatg
gtgtttaagttcttgttgcacccacatgcatggttgcgaaataaatcctgcaggctcttg
aatcattattttggggcattagctgggagaaaaagaccagaatgtcatacatttgtagtg
gattctcttctagagaggccaagtagcctgttcatggtggctgtttctctttgcttccag
ttaaaggagcagcccaccatgggcaacgttgatgttgatctcctcacagcaaatattgtt
tttgcggtctctagtcttcattcgctgattggacaatctgatcaagaaacctacaatggg
ttctggtccagtcttggtgaggatgagcaagtggtgttcctcaaagcctttgaagtgctt
gattcagggaaaggaaggtctacttttttggctcttacctcaggcaaacgtactgagaat
ggtgaagatgatgggaatgatataagaaatgtattgatcggaagtttgctcaaaagaatg
gggaagattgcacttgatatggaagctgttcagatgagagttgtgttcaacgtctataaa
gcttttgcctcgcaattgaatcaagaagaatgttacttatatgcctacaaaattctgctt
ccgttgtacaaagtctgcgaaggatttacgggaaaaatcatcacagatgagttgaaacag
ctagcagaagaggtacgagacagtataagggacaagagtttaggcaacaaaatgtttgtg
gaagtttacagtgaaataagaaacagtttgagaaggaaaagagagaagaaaaagcgagaa
gagaagctaatggcagtggtaaatccggagagaaacgccaagaggaaactgaggttagcg
tcaaagaataaagcaaacaagaaaaggagaatgacgagcatgaaattgtctagatgggct
tgctcttga
DBGET
integrated database retrieval system
