Arabidopsis lyrata (lyrate rockcress): 9305480
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Entry
9305480 CDS
T01578
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 1
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
9305480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9305480
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
9305480
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
9305480
NCBI-ProteinID:
XP_020872508
LinkDB
All DBs
Position
Unknown
AA seq
223 aa
AA seq
DB search
MGEEARALDMEETSEENTTRRNHVVHDLMVELYPLSSYYFSSRDALRVKDEIISDRVIRL
KSNYAAHGLRTCVEAVLLVELLKHPHVLLLQYRNSIFKLPGGRLRPGESDIEGVKRKLAS
KLSVNENVVVPGLEVGECIGMWWRPNFETLMYPFLPPNVKHPKECTKLFLVRLPVNQQFV
VPKNFKLLAVPLCQLHENEKTYGPIISQIPKLLSKFSFNMMEI
NT seq
672 nt
NT seq
+upstream
nt +downstream
nt
atgggagaagaagctcgagctttagatatggaggagacgagtgaagagaacacgacgaga
agaaaccatgtcgttcatgacttgatggtagaattatacccgcttagcagctactacttc
agttcaagagacgctcttcgcgtcaaggacgagattatctctgatcgagtcatcagattg
aaatccaattatgctgctcatggattgaggacttgcgttgaagctgttcttctggttgag
ttactcaagcatcctcatgttttgcttcttcaatatagaaactctattttcaagcttcct
ggtggtcgtttaagacctggagaatcagatattgaaggtgtaaaacggaaactagcatca
aagctatcggttaacgaaaatgtcgttgttccaggtttagaggtaggggaatgtattggg
atgtggtggagacccaactttgagacgttgatgtatcctttcttgccacctaatgtgaaa
cacccaaaggaatgcacaaagctttttcttgtgagattaccagtaaatcaacagtttgtc
gtgcctaagaacttcaaactcctcgctgttccattgtgtcaactccatgaaaatgaaaag
acttatgggccgatcatatcgcaaattcccaagcttctttcgaaattctcctttaacatg
atggagatatga
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