KEGG   Arabidopsis lyrata (lyrate rockcress): 9305980
Entry
9305980           CDS       T01578                                 
Name
(RefSeq) DNA damage-binding protein 1b
  KO
K10610  DNA damage-binding protein 1
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03420  Nucleotide excision repair
aly04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    9305980
  09124 Replication and repair
   03420 Nucleotide excision repair
    9305980
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:aly04121]
    9305980
   03400 DNA repair and recombination proteins [BR:aly03400]
    9305980
Ubiquitin system [BR:aly04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     9305980
DNA repair and recombination proteins [BR:aly03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      9305980
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      9305980
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd Beta-prop_RSE1_1st CPSF_A
Other DBs
NCBI-GeneID: 9305980
NCBI-ProteinID: XP_020872172
LinkDB
Position
Unknown
AA seq 1088 aa
MSVWNYAVTAQKPTCVTHSCVGNFTSPQELNLIVAKSTRIEIHLLSPQGLQTILDVPLYG
RIATLELFRPHGEAQDFLFVATERYKFCVLQWDYESSELITRAMGDVSDRIGRPTDNGQI
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCTKPTIAVL
YQDNKDARHVKTYEVSLKEKDFVEGPWSQNNLDNGADLLIPVPSPLCGVLIIGEETIVYC
SANAFKAIPIRPSITKAYGRVDLDGSRYLLGDHSGLIHLLVITHEKEKVTGLKIELLGET
SIASSISYLDNAVVFVGSSYGDSQLIKLNLQPDATGSYVEILEKYVNLGPIVDFCVVDLE
RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLKSSIDEAFDTFLVVS
FISETRILAMNIEDELEETEIEGFLSQVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELR
NKWDAPAGFAVNVATANASQVLLATGGGHLVYLEIGDGTLTEVKHVLLEYEVSCLDINPI
GDNPNYSQLAAVGLWTDISVRIFVLPDLTLITKEQLGGEIIPRSVLLCAFEGISYLLCAL
GDGHLLNFQLDTSSGKLRDRKKVSLGTQPITLRTFSSKSATHVFAASDRPAVIYSNNKKL
LYSNVNLKEVSHMCPFNSAAFPDSLAIAREGELTIGTIDDIQKLHIRTIPIGEHARRICH
QEQTRTFAICCLRNQPSAEESEMHFVRLLDAQSFEFLSTYPLDAFEYGCSILSCSFTDDK
NVYYCVGTAYVLPEENEPTKGRILVFIVEEGRLQLITEKETKGAVYSLNAFNGKLLAAIN
QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGA
IEERARDYNANWMAAVEILDDDIYLGADNCFNLFTVKKNNEGATDEERARMEVVGEYHIG
EFVNRFRHGSLVMRLPDSEIGQIPTVIFGTVSGMIGVIASLPQEQYAFLEKLQTSLRKVI
KGVGGLSHEQWRSFNNEKRTAEAKSYLDGDLIESFLDLSRGKMEEISKGMDVQVEELCKR
VEELTRLH
NT seq 3267 nt   +upstreamnt  +downstreamnt
atgagcgtatggaactacgccgttacggctcaaaaaccgacctgtgtcactcactcttgc
gtcggaaacttcaccagtcctcaagaactcaatctcattgttgcgaaatccactcgaatc
gagatccatctgctttctccacagggacttcagactatactggatgttcctctatatggg
aggatcgccactttggaattgttccgtccccatggtgaagcacaagattttttgtttgtt
gcaactgagagatataaattctgcgttcttcaatgggattatgagtcctctgagcttata
acaagggcaatgggggatgtttctgatcgtataggccgaccgacggacaatggtcagatt
ggtataattgatcctgattgcagattaattggtctgcatctgtatgacggcttgtttaag
gtcattccatttgacaataaaggccagctcaaggaagcttttaacataaggctcgaggag
ttgcaggtcctagatatcaagtttctgtatggatgcacaaagccaacaattgcagtactt
tatcaggacaacaaagatgctcgtcatgtcaaaacatatgaagtttctctaaaggagaag
gactttgtcgaaggtccatggtcacagaacaatctcgacaatggtgctgacttattgatc
cctgtaccttcacctctctgtggcgtcctcatcattggagaagaaacaattgtctattgt
agtgccaatgcattcaaagcgataccaataagaccttccatcacaaaagcatatggaaga
gttgatcttgatggttctaggtatcttcttggtgaccattccggactgattcacctgctt
gttataacccatgagaaagaaaaggtcactggcctcaaaattgagcttttgggtgaaacc
tctattgcatcttccatctcgtatcttgacaatgctgtcgtctttgtcggttcaagctat
ggagattcacagcttattaagctaaacttgcaaccggatgcaacagggtcatacgtagaa
attttagaaaagtatgtcaacctggggcctattgtcgacttttgtgtagttgaccttgag
agacaggggcaaggtcaggttgtaacttgctctggagcatacaaggatggttctcttcgc
atagttcgcaatgggataggaataaatgaacaggcgtccgtggaacttcaaggcatcaaa
ggaatgtggtcgttgaaatcgtcaattgatgaagcctttgatacattccttgtagttagt
tttatcagtgaaactcgtatactagccatgaatatagaggatgaactggaagaaacggag
attgagggtttcttgtctcaagtgcagactttattttgccatgatgctgtctacaaccaa
cttgtacaggttacctcaaattctgttagattagttagttctacaactagagaattgagg
aataaatgggatgccccagctggattcgctgttaatgttgcaactgcaaatgcgagccag
gttcttttggccactggaggtgggcatttggtctatcttgaaattggggatgggacattg
acggaagtcaaacatgtcctgttggagtacgaggtttcctgtcttgacatcaatcccatt
ggcgataatcctaattacagtcagctagctgcagtcgggttgtggactgatataagtgtg
aggatttttgtgctgccggacttgactcttattactaaggagcaactaggaggagagata
attccccgatctgttcttctttgtgcatttgaagggatatcttacttgctctgtgctctt
ggagatggtcatctcttaaacttccagttggatacaagtagtgggaaattaagagaccgg
aaaaaagtatcactagggactcagcctataactctgcgtactttttcatctaaaagtgca
actcatgtctttgctgcatcagatagaccagctgttatatatagcaacaacaagaagctg
ttatacagcaacgtgaatctgaaagaagttagtcatatgtgtcccttcaactctgctgct
tttccagacagtctagcaattgcaagggaaggcgaacttacaattggcaccatcgatgac
attcagaagcttcacatacgtaccattcctattggagagcatgctcgtcgcatatgccat
caggaacaaacacggacatttgctatctgctgtttgagaaaccaaccaagtgcagaagaa
tctgaaatgcattttgtccgtctgctggatgcccaaagtttcgagttcttgtcaacttac
cctttggatgcctttgaatacggttgctccatattgagctgctcgtttacagacgacaaa
aatgtctattattgtgttggtacggcatatgttttgcccgaggaaaatgaacccactaag
ggaaggatactggtgtttatagttgaagaagggagattgcagcttattacagagaaggaa
accaagggagctgtttattctctcaatgccttcaatggcaaacttcttgctgctattaat
caaaaaattcagttgtataagtggatgctacgggatgatggcactcgcgagctgcagtct
gaatgtggacatcacggtcacatactagctctttacgtgcagacccgtggagacttcatt
gtcgttggtgacctcatgaaatcaatctctttattgatctacaagcacgaggaaggtgcg
atcgaggagagagcacgggactataatgcaaactggatggcggcagttgagatactcgat
gatgacatctaccttggtgctgataattgcttcaacctattcacagtaaagaagaacaat
gaaggtgctacagatgaagaacgggctcgtatggaggttgttggtgagtatcacataggg
gaatttgtgaaccgattccgccatggctctcttgttatgaggcttcctgattcagagatt
ggtcagataccgaccgtcatatttggcactgtcagtgggatgattggagtgatagcttct
ctgccccaagaacagtatgcgtttctagagaaactgcagacgagtctgaggaaagtgatt
aaaggagttggtggtctaagccacgagcaatggagatcattcaataacgaaaaaagaact
gcggaagcgaagagttacttggatggagatctaattgaatcgtttttggatttaagcagg
ggtaagatggaggagatctccaaaggtatggatgttcaagtggaagagttgtgcaagaga
gttgaagaactcactaggcttcactga

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