Arabidopsis lyrata (lyrate rockcress): 9306071
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Entry
9306071 CDS
T01578
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit E
KO
K07466
replication factor A1
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03030
DNA replication
aly03420
Nucleotide excision repair
aly03430
Mismatch repair
aly03440
Homologous recombination
aly03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
9306071
03420 Nucleotide excision repair
9306071
03430 Mismatch repair
9306071
03440 Homologous recombination
9306071
03460 Fanconi anemia pathway
9306071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aly03000
]
9306071
03032 DNA replication proteins [BR:
aly03032
]
9306071
03400 DNA repair and recombination proteins [BR:
aly03400
]
9306071
Transcription factors [BR:
aly03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
9306071
DNA replication proteins [BR:
aly03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
9306071
DNA repair and recombination proteins [BR:
aly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
9306071
MMR (mismatch excision repair)
9306071
DSBR (double strand breaks repair)
HR (homologous recombination)
9306071
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
zf-CCHC
CDC24_OB3
CORD_N
Motif
Other DBs
NCBI-GeneID:
9306071
NCBI-ProteinID:
XP_002867952
UniProt:
D7MGU7
LinkDB
All DBs
Position
Unknown
AA seq
801 aa
AA seq
DB search
MEVSLTAGAIGKIMSGEVTTEADMIPVLQVTELKQLKAYQDPTRERFRMGLSDGTHLHQG
MLATDLNDLVKQGTLQSGSIVRLTHFGVHVVQTRRIVIVRELEVIKSNSDIIGHPVPGGK
HNDQRGAESGIKLNTTGSDQQGLGVRQVNNIETGRSNAAMSPQVDQRPVFGTSSSVPAST
TPSTRVDSNPSAGHGVSRQDHARDPPTSYPRQPQPPPPMYANRGPVVRNEAPPRIIPINA
LSPYSGRWTIKARVTNKAALKQYSNPRGEGKVFNFDLLDADGGEIRVTCFNAVADQFFDQ
IVVGNLYLISRGSLRPAQKNFNHLPNDYEIMLDNASTIKQCYEEDAAIPRQQFHFRTIGD
IESMENNSIIDVIGIVSSISPTVTITRKNGTATPKRSLQLKDMSGRSVEVTMWGNFCNAE
GQRLQNLCDSGEFPVLAVKAGRISEFNGKTVSTIGSSQLFIDPDFVEAHKLKDWFEREGK
SVPCISLSREFSGSGRVDVRKTISQIKDEKLGTSEKPDWITVSATIIYMKVENFCYTACP
IMNGDRPCSKKVTDNGDGTWRCEKCDKSVDECDYRYILQLQIQDHTDLTWVTAFQEAGEE
IMGISAKDLYYVKYEHNDEEKFEDIIRKVAFTKYIFKLKVKEETFSDEQRVKATVVKVDK
LNYSSDTRTILDAMDKLRTGDASSLSININAEGSHYNADAVNTGTGSSGSSGTRDPSSVQ
RRDFSLHAHQSGQSGNHYSSGSRPQGGDATTSCNVCGNSGHVSANCPSATTEPQGQYMGG
SYRGMSGSYGGGIPRQHVGSY
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atggaggtaagtttgacggcgggagcaatcgggaagataatgagtggggaagtgacgact
gaggcagatatgattccggtgctgcaagtgacggaattgaagcagcttaaggcttatcaa
gatccaacgagagagaggtttaggatgggtttatcagatgggactcacttgcatcaaggt
atgctcgcaactgatctcaacgatcttgtcaaacaagggactcttcaatccggttccatt
gttcgacttactcatttcggcgttcatgtcgtccagactcgaaggattgttattgttcgg
gaactggaggtgataaaatcgaattctgatataatcgggcatcctgttccaggaggaaag
cataatgatcaacgtggagcagagtctggtattaagttaaatacaactggttctgatcaa
cagggtcttggtgtccgtcaagttaacaatatcgagacagggagaagtaatgcagcgatg
tcacctcaagttgatcaaaggccagtgtttggtactagttctagtgttcctgcatcaaca
acgccttccactcgggtagacagcaacccgtctgcaggtcatggagtttctaggcaggac
catgctcgtgatcctccaaccagttatcctcgtcagcctcaaccaccaccaccgatgtat
gcaaacaggggaccagtggtaaggaacgaagcacctcctaggataattccaattaatgct
cttagcccgtactcgggtaggtggaccatcaaggccagagtcacgaataaagcagcactt
aagcaatacagtaatccccgtggggaggggaaagtgttcaactttgatcttcttgatgct
gatggcggagaaatacgtgttacttgttttaacgctgtggctgatcaattctttgaccag
attgttgttggtaatctttatctgatttcgaggggaagtttgcggcctgcccagaagaac
ttcaatcatcttcccaatgattacgagatcatgctggataatgcatcaactataaaacaa
tgctatgaggaggatgctgcaattccgcgccaacagttccatttccgtactataggtgat
attgaaagcatggagaataacagcatcattgatgtaattggtattgtgtcatctatcagt
cctactgtaacaataacgaggaaaaacggaactgcaacaccgaaaagatcacttcagttg
aaggatatgtctggccgaagtgtcgaggtaactatgtggggtaacttctgcaatgcagaa
ggacaaaggctgcaaaatctttgtgattctggggagtttccggttcttgctgttaaggcg
ggcaggatcagtgaatttaacggaaagacagtgagcaccattggatcaagtcaactgttc
attgacccagattttgttgaagcccacaaactgaaggactggtttgagagagaaggaaag
agtgtcccttgtatctccttatctcgggagttttccggcagtggcagagtagatgttcgt
aaaacaatttctcaaattaaagatgagaaactagggacctcagaaaaaccagactggatt
acagtcagtgccacaattatatacatgaaggttgaaaacttctgctacacagcttgtcct
atcatgaatggtgatcgtccgtgcagcaaaaaagtaacggacaatggagatggcacatgg
cggtgcgaaaagtgtgataaaagcgtcgatgaatgtgactacaggtatatactgcagctc
cagatacaggaccatacggatcttacttgggtcacagcattccaggaggctggtgaagag
ataatgggcatatctgctaaagatttgtattatgtgaagtatgaacacaatgatgaggaa
aaattcgaagatatcatccgtaaggttgcttttaccaagtacatcttcaagctgaaggta
aaagaagaaacattcagcgacgaacagcgtgtgaaagcaacagttgtgaaagtggacaag
ctaaactattcatcagataccaggactattttagatgccatggataaactcaggactgga
gatgcaagttctctttccattaacattaacgcagaaggatctcattacaacgctgatgca
gttaacactggtacaggaagctcaggaagctcaggaaccagagatccctcatcagtccaa
agaagggatttcagtttacatgctcatcaatcaggtcaatctgggaatcactatagtagt
ggctctaggcctcaaggtggtgatgctactactagctgcaatgtctgtggaaacagtggt
catgtttctgcaaactgtccaagtgctacgactgagccgcaagggcagtacatgggtggc
tcttacagaggcatgtcggggagttatggaggaggaatacctaggcaacatgttggaagc
tactga
DBGET
integrated database retrieval system
