Arabidopsis lyrata (lyrate rockcress): 9306591
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Entry
9306591 CDS
T01578
Name
(RefSeq) pre-mRNA splicing factor SR-like 1 isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9306591
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
9306591
Spliceosome [BR:
aly03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
9306591
Complex C
U4/U6.U5 tri-SnRNP related factors
9306591
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
9306591
NCBI-ProteinID:
XP_002870520
UniProt:
D7MIA4
LinkDB
All DBs
Position
Unknown
AA seq
395 aa
AA seq
DB search
MAEIQTNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNC
RGPSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYI
KDDEEFSPGSNGRMTTMGVYVRDLLLGLYYFDTLFPRIPVPVMRQIVSNLEKMNLPTKPS
GSTGDMTRGSEDTARRPPSVKASLSVSFGQRAPHRASTRGSSPVRRPPPSGYDRNGGDEV
KQRSPRRSQSRDYYSDRDSDRQREREREKDRERDRDRDRERERDRYRERERDYGNDRRSR
RDYDSRSRRNDYEDDRSRHDRRSRSRSRSRSRSVQIEREPTPSNKEKSAVTVNSNLAKLK
DLYGDASSQKRDEGFGTRRDSSSEEVIKLGGSSWR
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggcggagatacagacgaatgggagggcgtatgagtcattattggaaaaggttctttca
atgaacattctttcttctgactatttcaaagagctctatggtttaaagacttatcatgag
gttattgatgaaatctacaaccaagttaatcatgtggagccgtggatgggtggaaactgc
cgtggtccttcaacagcgtattgtcttctctacaaattctttaccatgaaacttacagtg
aagcagatgcatgggttgttgaagcacacagattctccttatattagagcggttggattc
ctatatttaagatatgttgcagatgcaaagacgttgtggacatggtatgaaccttacatt
aaagatgatgaggagttttcacctggatcaaatggacggatgacgacaatgggtgtttat
gtacgtgatctgctgcttggactgtactactttgatactctgtttcctcgtatacctgtt
cccgtgatgcgccagattgtatcaaaccttgagaagatgaatttaccaactaaaccttct
ggatcaaccggagacatgacccgtggctcagaagacactgcccgtcgtccaccatcagta
aaagcatccctctctgtatcatttggtcagcgtgcacctcatcgtgcttccaccagaggc
tcctctccggttcgccgtcctccaccgtctggttatgacagaaatggaggcgatgaagta
aaacagaggtccccacgtagaagccagagccgagactattattccgacagagactcagat
agacagcgggagagagagagggagaaagaccgtgaaagggacagagacagagacagggag
agggagagagatagatacagagaaagagaaagggattatggtaatgataggagatcaagg
cgtgactatgatagtagaagcagacgcaatgattatgaggacgatagaagcagacatgac
cggagaagcaggagcagaagcagaagtaggagcaggagtgtgcagattgagcgtgaacca
actcctagcaacaaggagaaatctgctgtgactgtgaacagcaatctcgcaaagctaaaa
gatttgtatggagacgcgagtagtcagaaaagggatgaaggatttggaacaaggagagat
tcaagttcagaagaagtgataaagcttggtggttcttcttggaggtga
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integrated database retrieval system
