Arabidopsis lyrata (lyrate rockcress): 9306885
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Entry
9306885 CDS
T01578
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9306885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9306885
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
9306885
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
9306885
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
ECR1_N_2
CHASE5
Motif
Other DBs
NCBI-GeneID:
9306885
NCBI-ProteinID:
XP_020872990
LinkDB
All DBs
Position
Unknown
AA seq
191 aa
AA seq
DB search
MTTELVTPGDVIGKATEFKAGKGAYVNDTTIYASLTGTRRIVSPLPESLDQRAVVEVTGH
KAHGPIPEPGSVVIARVTKVMARMAAVDILCVGSKAVRENFAGVIRQQDVRATEIDKVDM
HQSFRAGDIVRAMVLSLGDARAYYLSTAKNELGVVSAESAAGETMVPISWTEMQCPLSGQ
TEQRKVAKVGN
NT seq
576 nt
NT seq
+upstream
nt +downstream
nt
atgacgacggagctagtaacgccgggagatgtaatcgggaaagcgactgagtttaaagcc
ggaaaaggagcttatgttaacgacaccaccatctacgcttctctcacaggaactcgtcgg
attgtttctcctcttcccgaatcacttgaccagagagctgttgtagaagttacgggtcac
aaggcacatggtcctattccagagcctggttctgttgtcatagcaagagtgactaaagtt
atggctcggatggctgctgttgatatcttgtgtgttggttcaaaggccgttcgtgaaaat
tttgccggcgtaattaggcaacaagatgttagagcaacagagattgataaagttgacatg
catcagtcttttcgtgctggtgacattgttagagctatggttctgtctcttggtgatgca
cgggcttactatttgtcaactgctaagaatgaacttggtgtggtctcagcagaaagtgct
gcaggagaaacaatggttccaataagttggacagagatgcagtgcccattgtcgggccaa
acagagcagagaaaagttgccaaggtgggtaactga
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