KEGG   Arabidopsis lyrata (lyrate rockcress): 9306885
Entry
9306885           CDS       T01578                                 
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    9306885
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aly03019]
    9306885
Messenger RNA biogenesis [BR:aly03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     9306885
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     9306885
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1 ECR1_N_2 CHASE5
Other DBs
NCBI-GeneID: 9306885
NCBI-ProteinID: XP_020872990
LinkDB
Position
Unknown
AA seq 191 aa
MTTELVTPGDVIGKATEFKAGKGAYVNDTTIYASLTGTRRIVSPLPESLDQRAVVEVTGH
KAHGPIPEPGSVVIARVTKVMARMAAVDILCVGSKAVRENFAGVIRQQDVRATEIDKVDM
HQSFRAGDIVRAMVLSLGDARAYYLSTAKNELGVVSAESAAGETMVPISWTEMQCPLSGQ
TEQRKVAKVGN
NT seq 576 nt   +upstreamnt  +downstreamnt
atgacgacggagctagtaacgccgggagatgtaatcgggaaagcgactgagtttaaagcc
ggaaaaggagcttatgttaacgacaccaccatctacgcttctctcacaggaactcgtcgg
attgtttctcctcttcccgaatcacttgaccagagagctgttgtagaagttacgggtcac
aaggcacatggtcctattccagagcctggttctgttgtcatagcaagagtgactaaagtt
atggctcggatggctgctgttgatatcttgtgtgttggttcaaaggccgttcgtgaaaat
tttgccggcgtaattaggcaacaagatgttagagcaacagagattgataaagttgacatg
catcagtcttttcgtgctggtgacattgttagagctatggttctgtctcttggtgatgca
cgggcttactatttgtcaactgctaagaatgaacttggtgtggtctcagcagaaagtgct
gcaggagaaacaatggttccaataagttggacagagatgcagtgcccattgtcgggccaa
acagagcagagaaaagttgccaaggtgggtaactga

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