Arabidopsis lyrata (lyrate rockcress): 9306979
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Entry
9306979 CDS
T01578
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog B
KO
K08775
breast cancer 2 susceptibility protein
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03440
Homologous recombination
aly03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
9306979
03460 Fanconi anemia pathway
9306979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
aly04121
]
9306979
03036 Chromosome and associated proteins [BR:
aly03036
]
9306979
03400 DNA repair and recombination proteins [BR:
aly03400
]
9306979
Ubiquitin system [BR:
aly04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
9306979
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
9306979
DNA repair and recombination proteins [BR:
aly03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
9306979
FA (Fanconi anemia) pathway
Downstream FA components
9306979
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCA-2_OB1
BRCA2
BRCA-2_helical
Motif
Other DBs
NCBI-GeneID:
9306979
NCBI-ProteinID:
XP_020876630
LinkDB
All DBs
Position
Unknown
AA seq
1151 aa
AA seq
DB search
MSTWQLFSDSSGDGFRWEVAGRILQSDSDSTPTKALESTAPLPSMADLLLQGCSKLIERE
EALPGEIPMFRTGLGKSVPLKESSMAKAKSLLADSDLQNTNCSNPQMRQVDSAETLPMFR
TALGKSVPLKESSIAKALSILASDKIIDSDYVLPRESGFGVPNTLFQTASNKKVNVSSAG
LARAKALLGLEEDDLNGFNHVNQSSSSLQQHGLSVLKTHEEFDATVVKHHSGTPGQYEDY
VSGKRPEILNPSLKVPPTKFQTAGGKSLSVSAEALKRARNLLGDPELGSFFDDVAGGDQF
VTPQKDERLGDIAINNGSANTGYIAHEEKSSNKHTSNSFVSPLRSSSKQFRSVNLENLAS
GGNLIKKFDAAVDDTDCALNITELATHGLSNNKPIASNMAVTNSKENGFIPRARQFGRPA
DQPLVDITNCSDTAYANIKQDSTQKKRLGKTVSVSPFKRPRISSFKTPLKKNAQQASSGL
SVVSCDTLTSKKVLSTRYPEKSPRVYIKDFFGMHPTATTKMDYVPDHVRRIKSSNADKYV
FCDESSSNKVGAETFLLMLAESGASLQHASRKWVTNHYRWIVWKLACYDIYYPAKCRGNF
LTITNVLEELKYRYEREVNHGHCSAIKRILSGDAPASSMMVLCISAINPKTDNDSQEAHC
SDICSNVKVELTDGWYSMNAALDVVLTKQLNAGKLFVGQKLRILGAGLSGWATPTSPLEA
VISSTICLLLNINGTYRAHWADQLGFCKEIGVPLAFNCIKCNGGPVPKTLAGITRIYPIL
YKERLGEKKSIVRSERMESRIIQLHNQRRSALVEGIMCEYQRGINGVHSQNDTDSEEGAK
VFKLLETAAEPELLMAEMSPEQLTSFTIYKAKFEAAKQMQMEKSVAKALEDAGLGERNVT
RFMRIRLVGLTSLSYEGEHNPKEGIVTIWDPTERQRTELTEGKVYIMKGLVPMNSDSETL
YLHARGSSSKWQPLSQKDSANFQPFFNPRKPISLSNLGEIPVSSEFDIAAYVVYVGNAYT
DVQQKKQWVFVTDGSTQHSGENSNSLLAISFSTPSMEDSSISHISHNLVGSVVGFCNLIK
RAKDAKNKMWVGEATENSVYFINAEAAYSSHLKTSSAHIQAWAKLSSSNTVIHELRQTVL
SIIGACKSPSC
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgtggcaattattttccgattccagcggcgatggtttccggtgggaagtcgct
ggccggattctccagtccgactcggattctactccaaccaaggcgctcgaatccacagct
cctctaccttccatggccgatctcttgctccaaggatgctcgaagcttatagaacgggag
gaagcgctgcctggggaaatcccaatgttcaggactggcctggggaagtctgtacctcta
aaagagtcttccatggctaaagccaaatcccttttagcagattcagatttgcagaacact
aattgctcaaatccccaaatgagacaagtggattcagctgaaactttgcctatgttcagg
acggccttgggcaaatctgtccctttgaaagagtcttcaattgccaaagctttgtctatt
ctagcaagtgataagattattgactcagactacgttcttcccagggagagtgggtttggt
gtgcccaacacgctttttcaaacagcttctaacaagaaggttaatgtatcttctgccggt
ttagcaagagccaaggcattgctaggactagaagaagatgatttgaatggatttaaccat
gtgaaccagtcgtcttcttccctccagcaacatgggttgtccgttttaaaaactcatgag
gagtttgacgctacagtggttaagcatcattcaggaactccaggacaatatgaggattat
gtgtctgggaagagacctgaaatcttaaatccatctttaaaggtgcctccaacaaagttt
cagactgctggtggaaaatcattgtcagtgtcagctgaggcgttgaaacgtgccagaaac
cttcttggtgatcctgagttagggtctttctttgatgatgtggctggaggtgatcaattt
gttacaccacagaaagatgaaaggttaggtgatattgctataaacaatggaagtgccaac
acaggttatattgctcatgaagaaaagtcaagcaacaaacatacgtcaaatagttttgta
tctcctcttcggtcatcttcaaagcaatttagatcagtcaacttggagaacctagcttca
gggggtaatttgatcaagaaatttgatgcagctgttgatgacacagactgtgctctgaat
atcactgaacttgctacacatggactatcaaataacaagcctatagcatctaatatggca
gtgactaattccaaggaaaacggtttcattccaagagctaggcaatttggaaggccagct
gatcagccgcttgtcgatataacaaattgcagtgatacagcttatgcaaacattaaacaa
gacagtacccaaaagaaaaggctgggaaagacagtctccgtctctcctttcaaaaggcca
aggatttcatcctttaaaactcctttaaagaaaaatgctcagcaagcttcaagtggtttg
tctgttgtatcgtgtgatacacttacttccaaaaaggtgctttctacaagatacccagaa
aagtctccaagagtatatatcaaggatttttttggaatgcatccaacagctacgaccaag
atggattatgtgccagaccatgtcagaagaatcaaatcaagtaatgcagataaatatgta
ttctgtgatgagtcttcttcaaacaaggttggagctgaaacttttcttctaatgttggct
gagtctggtgcttccttacaacatgcatccagaaagtgggtcactaatcactacaggtgg
atagtctggaaacttgcatgctacgacatatactacccagccaaatgcagaggaaacttt
ctgacaatcaccaatgttcttgaggaactaaaatacagatatgagagagaggtcaatcat
ggtcattgctccgcaatcaagaggattctgagtggtgatgctccagcttcttcaatgatg
gtgctctgcatatcagctattaatcctaagaccgataatgattctcaggaagcacattgt
tctgatatttgcagcaatgtgaaagtagaactcactgatgggtggtactcgatgaatgct
gctctggatgtcgtgctaacaaagcagctgaatgctggcaaattgtttgtcgggcagaag
cttcgaatcctcggggcaggactttctggctgggctaccccaacatcaccacttgaggca
gtgatttcaagtacaatctgtttgttgttgaatattaatgggacatacagagctcactgg
gcagaccaactaggcttctgtaaagaaattggtgtccctctggctttcaactgtatcaag
tgcaatgggggtccagtgcctaaaacgctagctggcatcacacgaatataccccatccta
tacaaggaaaggttaggtgaaaagaagtcaatagttcgatcagagagaatggaaagtaga
attatacagctgcataatcagaggcgctcagctcttgttgagggtattatgtgtgagtac
cagagaggaattaatggtgttcacagccagaacgacactgacagcgaagaaggagccaag
gtctttaagctgttagagacggctgctgaacctgaactcctaatggcagaaatgagccca
gagcagttgacatctttcactatatataaagcaaaatttgaggcagccaagcaaatgcag
atggaaaaatcagtggcaaaagcactggaagacgctggcttaggtgaaaggaatgtcacc
cgattcatgaggattaggcttgttggcctgacgagtttaagttatgaaggagagcacaat
ccaaaagaaggcattgtaacaatctgggatcccacggagagacagagaaccgagctgaca
gagggaaaagtatacataatgaaagggctggtaccaatgaactcagattcagaaacactt
tacttacatgccagaggatctagctcgaaatggcagcctttgtctcagaaagattctgca
aattttcagccctttttcaacccacgtaaaccaatctctttgtcaaatcttggtgaaatt
cctgtttcaagtgaatttgatatcgctgcgtacgttgtatatgttggaaatgcatacacg
gatgttcaacaaaagaagcagtgggtgtttgtgacagatggatccactcaacattcaggg
gaaaactcaaacagtcttcttgctataagcttcagcaccccatccatggaagatagctct
atttcccacatcagccataatttggttggatccgtggtcggattctgcaatctaattaaa
agagcaaaggatgcgaaaaacaaaatgtgggttggtgaggcaacagagaactcagtgtac
ttcataaacgcagaagctgcctactcttctcacctcaaaaccagcagtgcccatatccaa
gcatgggctaagctctcttcttccaacaccgtcatccatgaacttcggcaaacagtccta
tctataatcggtgcttgtaaatcaccttcatgctga
DBGET
integrated database retrieval system
