Arabidopsis lyrata (lyrate rockcress): 9307002
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Entry
9307002 CDS
T01578
Name
(RefSeq) transcription factor bHLH140 isoform X1
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
9307002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aly03400
]
9307002
Enzymes [BR:
aly01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
9307002
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
9307002
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
9307002
DNA repair and recombination proteins [BR:
aly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
9307002
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
9307002
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DcpS_C
AAA_33
zf-C2HE
HIT
Macro
AAA_18
AAA_16
AAA_29
DM
Motif
Other DBs
NCBI-GeneID:
9307002
NCBI-ProteinID:
XP_020878909
LinkDB
All DBs
Position
Unknown
AA seq
699 aa
AA seq
DB search
MEVKIEESEKAKQIVVLLIGPPGSCKSTFCDTVMRSSHRPWSRICQDIINNGKAGTKAQC
LKMATESLREGKSVFIDRCNLDREQRSEFIKLGGPGIEVHAVVLELSAQVCISRSVKRTG
HEGNLQGGRAAAVVNKMLQSKELPKVNEGFSRIMFCYNDADVENASNTYNKLGPMDNLPS
GCFGEKKSDTKSQPGIMKFFKKVNALPGSSSNEAANATQNDNEKTRNVRVSPAKLGSADI
VPTLAFPSISTADFQFDLEKASDIIVEKAEEFLPKLGTARLVLVDLSQGSKILSLVKAKA
AQKNIDSARFFTFVGDITKLRSEGGLHCNVIANATNWRLKPGGGGVNAAIFKAAGPDLEA
ATRVRANTLLPGKAAVVPLPSTCPLHNAEGITHVIHVLGPNMNPNRPDNLNNDYTKGCKT
LREAYTSLFEGFLSVVQDQSKLPKRSNQTALSDSGEDIKEDSERNKKYKGSQDKAVTNNL
ESGSLEDTRDSGKKMSKGWSTWALALHSIAMHPERHENVVLEFSDNIVVINDQYPKARKH
VLVLARQESLDGLEDVRKENLQLLQEMHNVGLKWVDRFQNEDASLIFRLGYHSVPSMRQL
HLHVISQDFDSDSLKNKKHWNSFTSSFFRDSVDVLEEVKSQGKANVASEDLLKGELRCNR
CRSAHPNIPKLKSHVRNCRSQFPDHLLQNNRLVARPVRQ
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgaaaattgaagaatctgagaaagcgaagcagatagtggttcttctgattggt
ccgccaggaagctgcaaatcgacgttttgtgacactgtaatgcgttcctctcaccgccct
tggtctcgtatctgccaggacattattaacaatgggaaagctggaacaaaggctcagtgt
ttaaagatggcaacagaatcccttagggaaggaaagagcgtctttatagacagatgcaat
cttgacagggagcaacgctcggagtttattaagctcggtggtcctggcattgaagttcat
gcagtggttctggagctttctgctcaggtttgtatatctagatcagtcaaaagaactggt
catgaaggaaatctacaagggggacgagctgcagctgttgtgaataagatgcttcagagt
aaggaacttccgaaggtgaatgaagggttttctcggattatgttttgttacaacgacgcg
gatgttgaaaatgctagtaacacatacaacaagcttggtccaatggataatcttccttct
ggctgttttggcgaaaaaaaatcagacactaaaagccaacccggtataatgaagttcttt
aagaaagtcaatgctctgcctggttcatcttctaatgaagctgctaacgcaacacaaaac
gataatgaaaagactagaaatgttagagtttcgccagccaagcttggttctgctgatatt
gttcctacactggctttcccatccatttcgactgcggattttcagtttgatcttgaaaag
gcatctgatatcattgtcgagaaagcagaggaattcttgcctaaacttgggactgcacgt
cttgtcttggtagacttgagccaagggtcaaagattctgtctctggtcaaagctaaggct
gctcagaagaacattgactcagcgagattcttcacatttgtcggggacataactaagctt
cgttccgaaggtggtctacactgcaatgttatagctaatgctactaactggcggcttaaa
cctggaggtggaggtgtgaatgcagcaatattcaaagctgctggtccagatcttgaggct
gcgacaagagtacgagcaaacactcttcttcctggaaaagccgcggtagttcctcttcct
tctacttgtccattacacaatgcagaaggaattacacatgtcatacatgttctaggacca
aacatgaacccaaaccgaccagacaaccttaacaacgactacaccaaggggtgcaaaact
ctccgggaggcttacacatctctatttgaaggttttctatcagtagtacaggatcaatca
aagttgcctaaacgaagcaatcaaacagcgttgtcagattctggtgaggatattaaggaa
gactctgagagaaacaaaaagtacaaaggatcacaagataaggccgtaactaataatttg
gaatcagggtctctggaggatacaagagacagtggaaagaagatgagtaaagggtggagc
acatgggcattggctctccacagcatcgcgatgcacccagagagacacgagaatgtcgtg
ctagaattttcagacaacatcgttgtgataaacgaccagtacccaaaggcgcggaaacac
gtgctagtactggcgagacaggagagtctagatgggctagaagatgttcgcaaagagaat
cttcaacttctgcaggaaatgcacaatgttggtctgaaatgggtagatagattccagaac
gaggatgcatctcttatcttccgccttggatatcactcggttccgtcgatgcgacaacta
catttacacgttataagccaagactttgattcagatagtttgaagaacaagaaacactgg
aactctttcacatcctcgttctttcgtgactcagttgatgtacttgaagaggtcaagagc
caaggcaaggccaatgtggcgagcgaagatctgttgaaaggtgagctgcgttgcaatcgg
tgtagaagcgcacacccaaatattcccaaactcaaatcacatgttagaaactgtcgttct
cagtttcctgaccatctactccaaaacaatcgccttgtggctcgaccagtgaggcagtga
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integrated database retrieval system
