Arabidopsis lyrata (lyrate rockcress): 9307046
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Entry
9307046 CDS
T01578
Name
(RefSeq) probable mediator of RNA polymerase II transcription subunit 37c
KO
K03283
heat shock 70kDa protein 1/6/8
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
aly04141
Protein processing in endoplasmic reticulum
aly04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9307046
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
9307046
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
9307046
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
aly01009
]
9307046
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
9307046
03009 Ribosome biogenesis [BR:
aly03009
]
9307046
03110 Chaperones and folding catalysts [BR:
aly03110
]
9307046
04131 Membrane trafficking [BR:
aly04131
]
9307046
03051 Proteasome [BR:
aly03051
]
9307046
03029 Mitochondrial biogenesis [BR:
aly03029
]
9307046
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aly04147
]
9307046
Protein phosphatases and associated proteins [BR:
aly01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-5
PP5-interacting proteins
9307046
Spliceosome [BR:
aly03041
]
Complex B
Other components
Prp19 complex
9307046
Complex C
Prp19-CDC5 complex
9307046
Ribosome biogenesis [BR:
aly03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
9307046
Chaperones and folding catalysts [BR:
aly03110
]
Heat shock proteins
HSP70 / DNAK
9307046
Membrane trafficking [BR:
aly04131
]
Endocytosis
Clathrin-mediated endocytosis
Other core components
9307046
Autophagy
Chaperone mediated autophagy (CMA)
Chaperones
9307046
Proteasome [BR:
aly03051
]
Eukaryotic proteasome
Assembling factors
Other assembling factors
9307046
Mitochondrial biogenesis [BR:
aly03029
]
Mitochondrial protein import machinery
Endoplasmic reticulum membrane and cytosol
Other ER-memrane and cytosol factors
9307046
Exosome [BR:
aly04147
]
Exosomal proteins
Proteins found in most exosomes
9307046
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HSP70
MreB_Mbl
FGGY_C
DACNG
Hydantoinase_A
Motif
Other DBs
NCBI-GeneID:
9307046
NCBI-ProteinID:
XP_002873055
UniProt:
D7M7T7
LinkDB
All DBs
Position
Unknown
AA seq
653 aa
AA seq
DB search
MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKN
QVAMNPVNTVFDAKRLIGRRYSDASVQSDRQLWPFKIISGTAEKPMIVVEYKGEEKQFAA
EEISSMVLIKMREIAEAFLGTTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVLRIINEP
TAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD
NRMVNHFVQEFKRKNKKDITGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFDGADFY
SPITRARFEEMNMDLFRKCMEPVEKCLRDAKMDKSTVHDIVLVGGSTRIPKVQQLLQDFF
NGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTTLI
QRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQI
TVCFDIDANGILNVSAEDKTTGKKNKITITNDKGRLSKEDIEKMVQEAEKYKSEDEEHKK
KVEAKNALENYAYNMRNTIRDEKIGEKLPAADKKKVEDSIEEAIQWLDGNQLAEADEFED
KMKELESVCNPIIAKMYQGGAGGEAGGPGAAGMDEDDAPPASGGAGPKIEEVD
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggctggtaaaggagaaggtcctgcgatcggtatcgatcttggtacgacgtactcttgc
gtcggagtatggcaacacgaccgtgttgagatcatcgctaatgatcaaggaaacagaact
actccgtcgtacgttgctttcaccgactctgagaggttgatcggtgatgctgctaagaac
caggtcgctatgaacccggttaacactgttttcgatgcaaagaggttgattggtcgtaga
tacagtgacgcatcggtccaaagtgacagacagttatggcctttcaagatcatctccgga
actgcagagaaaccaatgattgtcgtcgaatacaagggagaagagaaacaattcgctgct
gaagaaatctcttccatggttcttattaagatgcgtgagatcgctgaagctttccttggc
actacggtcaagaacgctgtggttactgtccctgcttacttcaatgactctcaacgtcaa
gccacaaaggatgctggtgtgattgctggtttgaatgttttgcgtattatcaacgagccc
accgctgctgctattgcttatggtcttgacaaaaaggccacaagtgttggagagaagaat
gtcttgatctttgatcttggtggtggtacttttgatgtctctcttcttaccattgaagaa
ggtatctttgaggtcaaggcaacagctggtgatactcatcttggtggtgaagattttgac
aacagaatggttaaccactttgtgcaagagtttaagaggaagaacaagaaggacatcacc
ggtaacccgagagctctcaggagattgagaacagcttgtgagagagcaaagaggactctt
tcttccaccgcgcagacgaccattgagattgactctttgtttgatggagctgacttctat
tctccaatcacccgtgctagattcgaagagatgaacatggatctctttaggaagtgtatg
gagcctgttgagaagtgtcttcgtgatgctaagatggacaagagcactgttcacgatatt
gtccttgttggtggatccacccgtatccctaaggttcagcaattgcttcaggacttcttc
aacggcaaagagctttgcaagtctatcaaccctgatgaggctgtagcttacggtgcagct
gttcaggctgcgatcctaagtggtgaaggaaacgagaaggtccaagatcttctattgctc
gatgtcactcctctctcccttggtcttgaaactgctggtggtgtcatgaccactttgatt
caaagaaacacaacaattccaaccaagaaggaacaggtcttctcaacttattcagacaac
cagcctggcgttttgatccaagtttttgaaggtgagagggctagaaccaaggacaacaac
ctcctcggcaaattcgagctttctggaatccctcctgccccacgaggtgtccctcagatc
actgtctgctttgacattgacgccaatggtatccttaatgtctctgctgaggacaagacc
actggaaaaaagaacaagatcactatcactaatgacaagggtcgtttgtctaaagaggat
attgagaagatggtccaagaagctgagaagtacaagtctgaggatgaggagcacaagaag
aaggttgaggccaagaacgctcttgagaactacgcttacaacatgaggaacacaatccgt
gacgagaagatcggtgagaagcttccggcggcagacaagaagaaggttgaggactcgatt
gaggaagcaattcaatggctagatggtaaccaattggctgaagctgacgagtttgaagac
aagatgaaggagttggagagtgtttgcaatccgatcatcgctaagatgtatcaaggagga
gctggtggtgaagctggtggtcctggagctgctggaatggacgaagatgatgctcctcct
gcctcaggtggggctggtcccaagatcgaggaagtcgactaa
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