Arabidopsis lyrata (lyrate rockcress): 9307067 Help Entry 9307067           CDS       T01578                                  Name (RefSeq) E3 ubiquitin-protein ligase UPL4   KO K10590   E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26] Organism aly  Arabidopsis lyrata (lyrate rockcress) Pathway aly04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:aly00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     9307067  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04121 Ubiquitin system [BR:aly04121]     9307067 Enzymes [BR:aly01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.26  HECT-type E3 ubiquitin transferase      9307067 Ubiquitin system [BR:aly04121]  Ubiquitin ligases (E3)   HECT type E3    9307067 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  HECT ARM_ARMC5 Crust_neuro_H Motif Other DBs NCBI-GeneID:  9307067 NCBI-ProteinID:  XP_020879554 LinkDB All DBs Position Unknown AA seq 1509 aa AA seqDB search MENRGQKRMEVVEELPADKRACNSQDFRPSTSGSSVQAQANGTSSGHENVDADMDTSSSA SPSSRSDEEQDKDSDYGSCDSDEEDPRQRVLQDYQRQRSSGDQGKLKSLLASLTGETDPS GQLSELTELCEVLSFCTEESLSSVMADMLSPVLVKLSKHENNADIMLLAIRAITYLCDVY PRSVASLVRHDTIPALCQRLLTIEYLDVAEQCLQALEKISRDEPVACLNAGAIMAVLSFI DFFSTSIQRVAISTVVNICRKLPSEPASPFMDAVPILCNLLQYEDRQLVENVAICLTKIA DQVSESPAMLDQLCRHGLINQSTHLLNLNSRTTLSQPVYNGVIGLLRKLSSGSTLAFRTL YELNIGYRLKEIMSMYDISHSMSSTHPINACSNQVHEVLKLVIELLPASPVEDNQLALEK ESFLVNQPDLLKQFGTDMLPVMIQVLNSGANVYVSYGCLSAIHKLICLTKSGDLVELLKN ANMSSVLAGILSRKDHHVVVVALQVAEVLLEKYRDAFLNSFIKEGVFFAIEALSNSDRGQ QNPVSGIIQGSADLSQKPVTKEIVKCLCQSFERSLSSASQTCKIENDSVFIFATRIKESF FGPEVFNSEKGLTDVLQNLKNLSVALSDLMTVPIDAHVLHDEKFFSIWNQIMERLNGRES VSTFEFTESGVVKSLANYLSNGLYQRKLSKGDPECDSLPFVGKRFEVFTRLLWSDGEATS SLLIQKLQNSLSSLENFPIVLSQFLKQKNSFAAIPNGRCTSYPCLKVRFLKAEGETSLRD YSQDFVTVDPLCYLDAVDQYLWPKVNIEPMDSVEAKDQAIECQSSQLQSTSISCQGESSS PMEIDSESSDASQLQGSQVEDRTQLPGLCSGSGQQNASSSGTSSEKEDALPSLLFRLEGL ELDRSLTVYQAMLLHKLKSESETTNGLKLSGPHNITYERAAQLGDFHKNLFPPGSMEDEE YRPFLSYLFAHQLALRLKGSSPSAYDILFLLKSLESMNRFLFHLISLERVNAFGEGRLEN LDDLRVQVLPVPHSEFVSSKLTEKLEQQLRDSFAVSTCGLPPWFNDLMDSCPFLFSFEVK SKYFRLAAFGSQKVHHHPQHLSSSNVQGDGRPVTGSLPRKKFLVCREKILESAAKMMELY GNQKVVIEVEYSEEVGTGLGPTLEFYTLVSRAFQNPDLGMWRNDCSSFVGKPGEHSGVLA SSSGLFPRPWSGTSTTSDVLQKFVLLGTVVAKALQDGRVLDLPFSKAFYKLILGQELSSF DIHFVDPELCKTMVELQALARRKKVFNEAHGDSRPAKCDLSFHGTKIEDLSLGFALPGYT DYDLAPYSDNDMVNLDNLEEYIKAIVNATVCNGIQKQVEAFQSGFNQVFPIEHLRIFNEE ELETMLCGERDLFNMNEVLDHIKFDHGYTSSSPPVENLLEILHEFDREQQRAFLQFVTGS PRLPHGGLASLNPKLTIVRKHGSDSSDTDLPSVMTCANYLKLPAYSSKEKMKEKLIYAIT EGQGSFHLS NT seq 4530 nt NT seq  +upstreamnt  +downstreamnt atggagaacagaggccagaaacgaatggaggttgtggaagagttacctgctgataagaga gcttgtaactcacaggattttagaccaagcacatctggatcatctgttcaagctcaagct aatgggacgagttcagggcatgaaaacgttgacgctgatatggatacttcttcatctgct tcgccttcgagtcgatcagatgaagaacaggataaggattcggactatggatcttgcgat tctgatgaggaagatcccagacagagggtgcttcaggattaccagaggcagagatcatct ggtgatcaagggaaattgaagtctctcttggcgagtttgactggagaaaccgatccttca gggcagttatccgagcttacagagttatgtgaagtgttgtcattttgtactgaagaatcg ctgtccagcgttatggccgacatgctatcaccggtgcttgtaaagttatctaagcatgag aacaatgcagatattatgctccttgcaattagagcaattacttacttgtgtgatgtttat ccgcggtcagtagcatcccttgtaagacatgatactatccctgctctctgccaaagactt ttgactattgagtacttggacgttgctgagcagtgtttgcaagcacttgaaaaaatatcc cgagatgagccggtagcctgcttgaatgctggagcaattatggcagtgctttcgtttatt gatttcttctcaacaagcattcagagagtcgcaatttctactgtggtcaatatatgtagg aagcttccttctgagcctgcctcgcctttcatggatgctgttccaattttatgcaatctt cttcagtatgaagatcgacagctggttgagaatgtggctatttgcctgacaaaaatagca gatcaagttagcgagtcaccggcaatgttggatcaactgtgtaggcatggactaattaat caatcaacacatctcttaaacttgaatagccgcactaccctatctcaacctgtctacaat ggtgtgattggactgctaagaaaactttcttctggttcgactttagctttcagaacgtta tatgagcttaacattggctatagattaaaagaaatcatgtccatgtatgacatttctcat tcaatgtcgtctacacatcctatcaatgcatgttctaatcaggtgcatgaagtcttgaag ttagtaattgagcttcttccagcttcacccgtagaggataatcagctggcattggaaaag gaaagttttcttgtcaatcagcctgatcttttgaaacaatttggaacagacatgcttcct gttatgattcaggtgctaaactctggagctaacgtatatgtttcttatggttgcctatca gcaattcacaagctgatttgcttgactaagtcaggtgatcttgtcgagttactgaagaac gccaacatgtcaagtgttttggctggtattttgtcaagaaaggatcatcatgtggttgta gtagcactacaggttgcggaagtgcttcttgagaaatacagagatgcatttttgaattcc tttataaaggaaggtgtttttttcgcaattgaagcactctcaaattctgatagagggcaa caaaatccagtatctggtatcattcagggatcagctgacctttcacaaaagcctgttaca aaagagattgtgaaatgcctgtgccaatcttttgaaagatcgctatcctctgcttcacaa acttgtaagattgaaaatgattctgtcttcatttttgcaacacgtatcaaggagagtttc tttggacctgaggtattcaactctgagaaaggcttgacagatgtcctccaaaacctcaag aacttgtcagtagcactgagcgatttgatgactgtacccattgatgcacatgtcctgcat gatgagaaattcttctcaatatggaaccaaatcatggaaaggctgaatggaagggaatct gtgtcgacttttgaatttacagagagtggagttgtaaagtcactggcaaactatctttct aatggactctatcaaaggaaacttagcaaaggggatcccgaatgtgatagtttaccattt gttggtaagagatttgaggtgttcacaagattactttggtctgatggcgaggcaacttca tcattgttaatacagaagctccaaaattccttgtcttctttggaaaacttcccaattgtc ctaagtcaatttttgaagcaaaagaactcatttgcggctattccaaatgggcgttgcact agttatccatgcctaaaagttcgttttctgaaagcagagggggagacatctttgcgtgat tactcccaagactttgtcactgttgacccactttgctatttggatgctgtcgatcaatac ttgtggcctaaagttaatatagaacctatggattctgtggaagcaaaagatcaagctata gaatgccaatcttctcaattgcagtcaacttcgatatcttgtcaaggtgaaagctcgagt cctatggagattgacagtgagtcttctgatgcgtcccagttgcagggatctcaagtggaa gatcggacgcagcttccaggactatgtagtggttcaggacaacagaatgcttcctcctct ggaacctcttctgaaaaagaggatgcgctacctagtcttttgtttcgtcttgaagggctt gaactagaccgttctttgacagtatatcaggcaatgctcttgcacaaactaaaatcagaa agtgaaactaccaacggtttgaagctgagtggaccccacaacatcacatatgaaagggct gcacaacttggggattttcataaaaatctgtttccacccggatctatggaagatgaggag tatcgtccgttcttatcctatttgtttgctcatcaacttgctttgcgcctcaaggggtca agtccttctgcatatgacatattgtttctgcttaagagtctggagagcatgaacagattt ctctttcacctgatttctcttgaaagggttaatgctttcggtgaaggtaggctggagaat ttggatgatctgagggtacaagttcttcctgtgccacattctgaatttgttagcagcaag cttacagagaagttagagcagcagcttcgtgattcttttgctgtgtcaacctgcggtctg ccaccatggtttaatgatctaatggattcatgtccgtttttgtttagttttgaagtcaaa tctaaatacttcagacttgcagcctttggttcacagaaggtccatcatcatccacagcac cttagcagttcaaatgttcaaggcgatgggcgcccagtaactggcagtttacctcgtaaa aaattcttagtttgccgtgaaaaaattctagagtctgctgccaaaatgatggagttatat ggcaaccagaaggtggtcattgaggttgaatacagtgaagaagtcggaactggtcttggg ccaacactggagttctatacacttgtcagtagagcatttcaaaatcctgatcttggtatg tggaggaatgattgtagttcctttgttgggaagccaggtgaacactcgggagttttggca tcttcttcaggactctttccacgaccttggtcaggtacatcaactacttcagatgtgctg cagaaatttgtcctcttggggacagtggtagcaaaggctttacaagatggtcgagtctta gaccttcctttttccaaagccttctataaactaattctcggacaggagctgagttcattt gacatccacttcgttgaccctgaactttgtaaaacaatggtggaattgcaagctctggca cgtaggaaaaaggttttcaatgaagcacatggtgattcccgaccagccaagtgtgattta agtttccatggaacaaagattgaggacctttctcttggatttgcattacctggctacaca gactatgatcttgctccctattctgataatgatatggtaaatttggataacctcgaggaa tatatcaaggctattgtcaatgccacagtatgtaatggtatccaaaaacaagtggaagcc tttcagtctggatttaatcaggttttccctattgaacatcttcggatattcaatgaagag gagctagaaactatgttgtgtggagaacgcgatctctttaatatgaatgaagtcttggat cacatcaagtttgatcatggatatacttctagcagcccaccggttgaaaatttgttggag attctgcatgagtttgacagggagcaacaacgagcgtttctgcaatttgtaacaggatct cctcggctacctcatggcggtttggcgtctctcaatcccaaactaacaattgtccgcaag catggtagcgattcttcagatactgacctccctagtgtgatgacatgcgccaattatctg aagcttcctgcttattcatccaaagagaagatgaaggagaagctaatctatgccataact gaaggtcaaggttccttccatctctcttaa

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