Arabidopsis lyrata (lyrate rockcress): 9307098
Help
Entry
9307098 CDS
T01578
Name
(RefSeq) cell division control protein 48 homolog E
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
9307098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9307098
03009 Ribosome biogenesis [BR:
aly03009
]
9307098
04131 Membrane trafficking [BR:
aly04131
]
9307098
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aly04147
]
9307098
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
9307098
Ribosome biogenesis [BR:
aly03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
9307098
Membrane trafficking [BR:
aly04131
]
SNARE
SNARE associated proteins
Others
9307098
Autophagy
Aggrephagy
Other aggrephagy associated proteins
9307098
Exosome [BR:
aly04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
9307098
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_2
AAA_5
AAA_33
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_17
AAA_28
Mg_chelatase
AAA_18
ATPase_2
Parvo_NS1
IstB_IS21
ABC_tran
Viral_helicase1
NACHT
AAA_7
Vps4_C
NB-ARC
AAA_lid_PRS2_C
TsaE
AAA_24
DUF815
Zeta_toxin
Zot
Motif
Other DBs
NCBI-GeneID:
9307098
NCBI-ProteinID:
XP_002873087
UniProt:
D7LWN0
LinkDB
All DBs
Position
Unknown
AA seq
810 aa
AA seq
DB search
MSNQPESSDSKPKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDT
ILIKGKKRKDTVCIALADETCEEPRIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHI
LPVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVV
APDTEIFCEGEPVKREDEERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP
PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA
PSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPAL
RRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCTE
AALQCIREKMDVIDLEDDSIDAEILNSMAVSNEHFHTALGNSNPSALRETVVEVPNVSWE
DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA
NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNSVGDAGGAA
DRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRLNIF
KACLRKSPVAKDVDVTALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKERRRSENP
EAMEEDMVDDEVSEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFDS
TASAGRTIGGAAADPFATSAAAADDDDLYS
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaccaacctgaatcttccgactcgaaacctaagaaggatttcagtactgcgatt
ctcgagaggaagaagtctccaaaccgacttgttgtcgatgaagccattaacgatgacaac
tctgttgtctctctccatcctgctaccatggaaaagctccagctttttcgaggcgataca
atcctcatcaagggtaagaagagaaaggacactgtgtgcattgcccttgctgatgaaaca
tgtgaggaacccaggatcagaatgaataaggttgtaaggtctaacttgagggttagactg
ggagatgttatttctgttcaccagtgcccagatgtcaagtatggaaagcgtgtgcacatc
ttgccagttgatgatacagttgaaggcgttactggaaacctttttgatgcttaccttaaa
ccttacttcctggaggcgtaccgcccagtgaggaagggagatcttttcctagtgagagga
ggaatgaggagtgtggagttcaaagtgatcgagactgatcctgctgagtactgtgtggtg
gctccagatacagagattttctgtgagggtgaaccagtcaagagggaagacgaagaaagg
cttgatgatgtcggttatgacgatgttggtggtgtcaggaaacagatggctcagattagg
gaattggttgaacttcccttgaggcatccacaactctttaaatcaattggtgtgaagcca
ccaaagggaattctgctttatggacctcctggatccgggaagactcttattgctcgtgct
gtggctaatgaaaccggggcatttttcttctgtatcaatggaccggaaatcatgtcgaaa
ctggctggtgagagtgagagcaacctcaggaaagcatttgaggaggctgagaagaatgcc
ccttctatcatattcattgatgagattgactctattgcaccaaaaagagagaagacgaat
ggtgaggttgagaggaggattgtctctcagctccttacgcttatggatggactaaaatca
cgtgcccatgttattgttatgggagcaacaaatcgccccaacagtattgatccggctttg
agaaggtttggaagattcgacagggaaattgatatcggtgttcctgatgaaattggacgt
cttgaagttcttaggatccacacgaagaacatgaagctagctgaagatgtggatctagaa
agaatctccaaggacacgcatggatatgttggagctgatcttgcagctctatgcactgaa
gctgcccttcaatgtatcagagagaagatggatgtgattgacttggaagatgactcaatt
gacgccgaaatcctcaattccatggcggtgtctaatgaacacttccacaccgctcttgga
aacagcaacccatccgcacttcgtgaaactgttgtggaggttccaaatgtctcctgggag
gatattggaggtcttgagaatgttaagagagagcttcaggagactgttcaataccctgtt
gagcatccagagaaattcgaaaagtttggtatgtctccatcaaagggagttcttttctac
ggtcctcctggatgtgggaaaacccttttagccaaagctatagcaaacgagtgccaagca
aacttcatcagtgtcaagggacccgagcttctcacaatgtggtttggagaaagtgaagcc
aacgtccgtgaaatctttgacaaggctcgtcaatctgctccttgtgttctgtttttcgat
gagcttgactccattgctactcagagaggaaacagcgtgggtgatgccggcggtgcagct
gatagagtgttgaatcagcttctgacagaaatggatggaatgaatgcaaagaagactgta
ttcattattggagcaactaacagaccagatatcatagatccagctcttcttcgacctgga
agactcgaccagcttatctacattcctctacctgatgaagattcccgtctcaatatcttc
aaggcctgcttgagaaaatctcctgtcgctaaagatgtagatgtgactgcactcgctaag
tacactcagggattcagtggtgctgatatcactgagatctgccagagagcttgcaagtac
gccatcagagaaaacatcgaaaaggatattgagaaagagcgtagaaggagcgagaatcca
gaggcgatggaggaagatatggtggatgatgaagtttcagagattcgagctgctcatttc
gaagagtcgatgaaatatgcaaggagaagtgtaagtgatgctgatattcgcaagtaccaa
gcttttgctcagacactgcagcaatctagagggtttggatctgagttcaggtttgactca
accgcttctgcgggacgcaccattggtggtgcagccgctgatccctttgccacttctgca
gctgcagctgatgacgacgatctctacagttag
DBGET
integrated database retrieval system
