Arabidopsis lyrata (lyrate rockcress): 9307191
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Entry
9307191 CDS
T01578
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9307191
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9307191
03012 Translation factors [BR:
aly03012
]
9307191
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
9307191
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
9307191
Translation factors [BR:
aly03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
9307191
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
T2SSE
ATPase
nSTAND3
AAA_19
AAA_16
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
9307191
NCBI-ProteinID:
XP_020875911
LinkDB
All DBs
Position
Unknown
AA seq
1158 aa
AA seq
DB search
MRFTKRISLLLGQTTKIHHSRSLLGNPTLCRSYIVGPVSTSSPAFLISSRNGDGVTGLYD
PICRRFIGHTAEQFSDDEYECEFEEHKASSSVANVDEWKWKLGILLANDSEQEIVSRDKR
DRRDYEQISSLAKRMGLYSEIYGKVVVASKVPLPNYRPDLDDKRPQREVVLPLSLQRRVE
GLLQEHLDRQQLSSGKANECVADSQPPKQTEELPDENSDSFLDGSVMEKVLQRRSMRMRN
MQRTWQESPEGRTMLEFRKSLPSFKDKERLLQAIARNQVIVVSGETGCGKTTQLPQYILE
SEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGFKVRLEGMRGKNTHLLF
CTSGILLRRLLSDRNLNGVTHVFVDEIHERGMNEDFLIIVLKELLPRRPDLRLILMSATL
NAELFSNYYGGAPTIHIPGFTHPVKAHFLEDVLEITGYKLTSFNQVDDYGQEKTWKTQKQ
LMPRKRKNLITTLVEEALSKSNFESYNSRTRDSLSSWMPDCIGFNLIEAVLCHICRKERP
GAVLVFLTGWDDIRSLSDQIKAHPLLGDPNRVLLLMCHGSMATAEQRLIFERAPPNIRKI
VLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRLL
PGECYHLYPKCVYDAFAEYQLPELLRTPLNSLCLQIKSLQVESIAEFLSAALQAPESLAV
QNAIGFLKMIGALDEKENLTDLGKLLSILPVDPKLGKMLIMGAIFRCFDPILTIVSGLSV
RDPFLLPQDKKDLALSAKLRFSAKDYSDHMALVRAFEGWKDAEREGSAYEFCWRNFLSAQ
TLQAIHSLRKQFNYILKEAGLVHDDLTLNNKLSHNQSLVRAVICSGLFPGIASVVHRETS
MSFKTMDDGQVSLYANSVNSRFPTIPYPWLVFGEKVKVNAVLIRDSTGVPDSSLILFGGA
LSTGVQVGHLKMLDGYIDFFMDPNLADSYVKLKEELDKLLQKKLEDPSMDIHKEGKYLML
AVQELVAGDQCEGRFVFGRDTKRPSQQQIGENKHSKDGTNPKSLLQTLLMRAGHSPPKYK
TKHLKTNEFRALVEFKGMQFVGKPQRNKTLAEKDAAVEALAWLTHTSDNSTGHADYRPDV
TDNMLKLLGGRRRRSKGK
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttcacaaaacgaataagcctcctcttggggcagacgaccaagattcatcatagt
cgctctctattaggaaatccaactttatgcaggtcttatatcgttggtccggtctctact
agttcgccggcgtttctgatttcgagtcgtaatggtgatggtgttacgggattgtacgac
ccgatatgtcgtcgtttcatcgggcacactgcggaacagttctcggatgatgagtacgag
tgtgagttcgaggaacataaggcttcatcttctgtggccaatgttgatgagtggaagtgg
aagttaggcattctgctggccaatgatagtgaacaagaaattgtttccagagacaaaagg
gatcgaagagattatgagcagatctcaagtcttgctaagaggatgggactgtacagtgaa
atttacggaaaagtggttgttgcaagcaaggttcctcttcctaactaccgaccagatttg
gatgataagcgaccacaacgggaggtggtgcttccgttgagtttgcaaagaagggtagag
ggactccttcaggaacaccttgatagacagcagctaagctcaggaaaggctaatgaatgt
gtagcagattctcaacctcctaaacagactgaagaacttcccgatgaaaattctgattcg
tttctcgatggttctgttatggagaaggtacttcagaggaggagtatgcggatgcgcaat
atgcagagaacctggcaggaatcccctgagggacggacgatgctggaattccggaaatct
ttgccttcattcaaggacaaagaaagacttcttcaagctattgctcggaaccaggtgatt
gttgtatctggggagactggatgtggtaagacaactcagcttccacaatacattttggaa
tcagagatagagtctggtcggggagcattctgcaacatcatttgtacacaacctaggaga
atatctgccatggcagtttcagaaagagtgtcagctgagagaggagaacctcttggtgaa
acggttgggtttaaagttcgtctagaaggaatgagaggaaagaatacccaccttctattt
tgtacaagtggtatcctactcagacggctccttagtgatcgcaatttgaatggcgtaaca
catgtttttgttgatgagattcatgaaaggggcatgaatgaagatttcttaattatagtg
ttgaaggagcttcttccacggcgtccagatctgagattgattctcatgagtgccactttg
aatgctgaactcttttctaattactatggaggggcacctaccattcacatccctggcttc
acacatccagtgaaagcacattttttggaggatgtactggaaataacgggatataagttg
acctcttttaatcaagttgatgattatggccaagaaaagacgtggaaaacgcaaaaacag
ttaatgcctcgcaaaagaaaaaacctgatcactactcttgttgaggaagctctcagcaag
tcaaattttgaaagctataactctaggacacgtgattcactttcttcttggatgcctgac
tgcataggatttaatctcattgaggctgttctctgccacatatgccgaaaagaacgtcca
ggtgctgtgttagtatttttaacaggatgggatgatatcagatccctgagcgaccaaatt
aaagcccatcctctcttgggggatcccaatagggtcttgctattgatgtgccacggttca
atggcaactgctgaacagagactcatttttgagagagcacctcctaatattcgcaaaatt
gttcttgctacaaacatggcagaagctagtattacaataaacgatgtagtttttgtggtt
gactgtggaaaggcaaaagagaccacctatgatgctttgaacaatacaccttgtttgcta
ccttcctggatatctcaagcttctgctcgacagagaaggggaagagctgggcgtctgctt
ccgggagaatgctatcacctataccccaaatgcgtctatgatgcttttgcggagtatcaa
cttcctgaacttctgagaactcctttaaactctctctgcctgcaaattaaaagtcttcag
gttgaaagcattgcagaattcttgtcagctgcacttcaggctccagagtctttggctgtt
caaaatgctattggattcctgaaaatgatcggagcactggatgagaaggaaaatctaacg
gatcttggaaaactcttatcgattctccctgttgatcccaagctggggaaaatgctgata
atgggtgccatcttccgctgctttgatccgatcctgacaattgtatcagggctaagtgtt
agagatcctttccttctacctcaagacaaaaaagacttagctttatcagccaagttgaga
ttctcagccaaagactatagtgaccatatggcactggttcgtgcctttgaagggtggaaa
gatgctgaaagagaaggatcggcttatgagttctgttggaggaatttcctgtcagctcag
acgcttcaggcgatacattctctaaggaagcagttcaactatattctgaaagaagctggc
ttagtacatgatgatttaactctcaacaacaagctaagtcacaaccagtctctggttcgt
gctgtcatttgctctggcctattccctggaatagcatctgttgtgcacagagagacttcc
atgtcattcaagacaatggatgatggccaagtatcgctatatgcgaattctgttaattcg
cggttcccaacaattccatacccttggctagtctttggagagaaagtaaaggtcaatgca
gtgctcatacgggactccactggtgtccctgattccagtttgatcctttttggtggtgca
ctgagcactggagtacaggtgggacatctaaaaatgcttgacgggtacattgatttcttc
atggatccaaatttggctgattcctatgtaaagctgaaggaagaactcgataagcttctt
caaaaaaagcttgaagatccaagcatggacatccacaaagaaggcaagtacctcatgctt
gcagttcaagagctcgtggctggagaccaatgcgaaggcagatttgtctttggccgtgac
acaaagaggccaagccaacagcaaataggagagaacaaacactccaaagacgggacaaac
ccgaagagtctccttcagacacttttgatgagagctggacactcacctccaaagtacaag
acaaaacatctcaagaccaacgaattcagagcacttgtggagtttaaaggaatgcagttc
gttgggaagcctcagaggaataaaacgctcgctgagaaagatgcagctgttgaggccttg
gcttggttgactcatacctctgataatagtactggccatgcagattatcgacctgatgtt
actgataacatgcttaaactccttggaggacggcgcaggcggtccaagggcaagtaa
DBGET
integrated database retrieval system
