Arabidopsis lyrata (lyrate rockcress): 9307230
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Entry
9307230 CDS
T01578
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 18
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aly03009
]
9307230
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
9307230
Ribosome biogenesis [BR:
aly03009
]
Eukaryotic type
Pre-60S particles
Helicases
9307230
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
POP1_C
Motif
Other DBs
NCBI-GeneID:
9307230
NCBI-ProteinID:
XP_002871160
UniProt:
D7LYE5
LinkDB
All DBs
Position
Unknown
AA seq
593 aa
AA seq
DB search
MDSSANINKALTETRFSDLEPPLSGNIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDA
ATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIISPTRELSSQIYNVAQPFVSTLANV
NSVLLVGGREVKADMKIIEEEGCNLLIGTPGRLSDIMERMEILDFRNLEILILDEADRLL
EMGFQRQVNYIISRLPKQRRTGLFSATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQF
TNSKTPSGLHLEYIECEADKKSSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPAL
KSISLIPIHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPN
MFNHRAGRTARLGRLGKAIVFLLPKEEAYVEFMRIRRVPLEERKCSEDASDVIPIIRSAA
MKDRAVLEKGLKAFVSFVRAYKEHHCYFIFRWKELEIGKLAMGYGLLYLPSMSEVKQHRL
SSEGFTPVEGVKFDEIKFKDKSREKQRQQNLQVRKEKRQEEKREKGKRKRVDAPTTNDPK
KASRKLTGKQRQTIQTAEDEEVMDRDYKLMIKVKKGLIKEDEYERLTGDDDLF
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggattcatcggcgaacataaacaaagctttaacggagacgcgtttctcggacctcgaa
cctcctctctccggaaatatcattgaggcgcttaatcagtctgatttcgagttctgcact
ccggttcaagccgcgacgattcctttactctgtagttacaaggatgttgccgtcgacgct
gccaccggttctggaaaaaccctagctttcgtcgtccccctcgtcgaaatcctccgtcga
tccacttcattccctccgaagcctcatcaggtcatgggggtgattatatcgccaacaaga
gagctatcgtcgcagatatataatgtggcacagccatttgtttcgactttggcaaatgtg
aactctgtgttacttgttggaggccgagaggtgaaagctgacatgaagattattgaagaa
gaaggatgcaatcttttgattggtacacctggaaggctttcagatataatggaacgaatg
gagattctcgattttcgaaatcttgagattcttattttagacgaggctgataggcttttg
gagatggggttccaaaggcaggtgaattacattatctcacgcttgccaaagcagaggagg
actggcctcttttcagctactcaaacagaaggcgttgaagagctcgccaaggctgggctt
aggaaccctgtgagagttgaagttcgagctaagtccaagtccgaatcatcccagcaattt
acaaactcgaaaaccccttctggtcttcatcttgagtatatcgaatgcgaagcagataag
aaatcatcacaactagtggatctcctcatcaagaacagtgataaaaagcttatagtattc
ttcatgacctgtgcttctgttgactactggggactcgtactttcaaaaattcctgccctg
aagtctatatctttaattcctatccatggggatatgaagcagaatgcaagagataaggca
ttagcttcatttactaaagcatcaagcggtgcccttctgtgcacagacgtcgctgcacgt
ggacttgatattccaggcattgattatgtagttcagtatgatcccccacaagacccaaat
atgttcaaccacagggccggcagaactgcaagattgggaagactagggaaggcaattgtg
tttttactgcctaaggaggaagcctatgtagagtttatgcgcataagaagagtccctctg
gaagagagaaaatgctctgaggacgcatccgatgtcatcccgattatacgttcagctgcc
atgaaggaccgagcagtgttggagaagggattaaaggcatttgtttcctttgtccgtgct
tataaggagcatcactgctatttcattttcagatggaaagaacttgaaattggaaagtta
gccatgggatatggcctcttgtatcttccttcaatgtctgaagttaaacaacacagactt
tccagtgagggtttcacacccgttgaaggtgtcaagtttgacgaaataaaattcaaggac
aaatctcgggagaaacaaagacagcaaaacttacaagtaaggaaagagaaacggcaagaa
gagaaaagagagaaaggcaagagaaaaagggttgatgctcctactactaatgatcctaag
aaagcgtcgagaaagttaacagggaagcaaagacaaactattcaaactgctgaagatgaa
gaagtgatggatcgagattataagttaatgataaaagtaaagaaagggttaattaaagaa
gatgaatacgaaagacttacaggagatgatgatttattctga
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