Arabidopsis lyrata (lyrate rockcress): 9307237
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Entry
9307237 CDS
T01578
Name
(RefSeq) small RNA degrading nuclease 2
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
9307237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aly03009
]
9307237
Ribosome biogenesis [BR:
aly03009
]
Eukaryotic type
Pre-60S particles
RNases
9307237
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
DNA_pol_A_exo1
DUF2536
Motif
Other DBs
NCBI-GeneID:
9307237
NCBI-ProteinID:
XP_020875970
LinkDB
All DBs
Position
Unknown
AA seq
464 aa
AA seq
DB search
MEDVLATAEGEVLVKLVKLAQKLGLKGKHGSWKEFLDFYDKQLGSSSLSDPSKRRKDDLV
AFLTTLKKKEDLQLLARVLKLDNDVFEKCRKKSPDETTEQRLVRMTLTHDEYPLDYLFPS
NAEDWVITGLGKKKMEPTKIEMIAIDCEMVLCEDGSEALVRVAAVDRDLKVILDEFVKPN
QPVVDYRTFITGLTAQDLEKATLSVVDIQEKLLMFLSEDTILVGQSLNHDLKVLKMDHAR
VIDTSLVFKYNYDGTRRPLRLKRPSLNHLCKCILGYEVQKEGVPHNCVHDAEAAMKLVLA
ILENGVETSVPLSKEMLEAEKSKLYLHKIPCNVPYEELNGVVSRDIPHEVKPSKKQDRHY
YSAIVVFRSPEEANQAFENIAGDLGKDSTGLSQKQVFLELSSSGPRYVLIRKMVEDDLVG
EVSAEEKNASSKKRKREKDSKETRERRRCKPLRRKKQRSYVNRR
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgtgctagccacggcagagggagaggttttagtaaagctggtgaagttagcg
caaaagctaggtttaaaaggcaaacacggatcatggaaggaatttctagatttttacgac
aaacagttaggatcttcgagcttgagtgatccttcaaagcggcgcaaagatgatttggtc
gcttttcttactacactcaagaagaaagaagatttgcagctgttggctagggttctgaaa
ctcgacaatgatgtttttgagaaatgcagaaagaaatctccggatgaaaccactgagcag
aggctagttcgaatgactcttactcatgatgagtacccattagactatttgttcccatct
aacgccgaggattgggtcataacagggcttgggaagaaaaagatggaaccgaccaagatc
gaaatgattgccattgattgtgagatggttctttgtgaagatgggagtgaagctctcgtt
agagttgctgcagttgaccgtgatttaaaggtgattcttgacgaattcgtgaaaccgaat
caaccagttgttgactataggacttttattactggacttactgctcaagatcttgaaaag
gctactctatctgtggtagatatacaggaaaaattgctgatgtttctctcagaggataca
attttggtaggtcaaagtttgaaccatgatcttaaagtattgaagatggatcatgccaga
gtaatagatacttcacttgtgtttaagtataactatgacggtacaagaaggcctttaaga
cttaaaagaccttctttgaatcatctctgcaagtgtatattgggatatgaagtgcagaaa
gaaggtgttccccacaattgtgttcatgatgcagaagctgcaatgaaacttgtacttgct
atactagagaatggagtagagacctccgttccactatctaaagagatgttggaagctgag
aagtcaaagctctacctccataaaatcccttgcaatgtcccatatgaagagttaaatgga
gttgtttccagggatatcccacatgaagttaagccgtcgaaaaaacaagatcgtcactac
tatagcgcgattgttgtttttagaagtccagaagaagcaaatcaagcatttgaaaacatt
gctggagacttgggaaaggattcgacgggtttgtcacaaaaacaggtctttctagagctg
agttcatcagggcctagatacgttctcattcgtaaaatggtcgaagatgatttggttggg
gaagtctctgcagaggagaagaatgcgagttctaagaaacggaagagagaaaaagattct
aaagagaccagagagagacgcagatgtaaaccattgcgtagaaagaaacagagaagctat
gtgaaccgaagatga
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