Arabidopsis lyrata (lyrate rockcress): 9307372
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Entry
9307372 CDS
T01578
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03030
DNA replication
aly03420
Nucleotide excision repair
aly03430
Mismatch repair
aly03440
Homologous recombination
aly03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
9307372
03420 Nucleotide excision repair
9307372
03430 Mismatch repair
9307372
03440 Homologous recombination
9307372
03460 Fanconi anemia pathway
9307372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aly03000
]
9307372
03032 DNA replication proteins [BR:
aly03032
]
9307372
03400 DNA repair and recombination proteins [BR:
aly03400
]
9307372
Transcription factors [BR:
aly03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
9307372
DNA replication proteins [BR:
aly03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
9307372
DNA repair and recombination proteins [BR:
aly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
9307372
MMR (mismatch excision repair)
9307372
DSBR (double strand breaks repair)
HR (homologous recombination)
9307372
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
DUF223
tRNA_anti-codon
DUF8448
BRC-2_C
Motif
Other DBs
NCBI-GeneID:
9307372
NCBI-ProteinID:
XP_002871302
UniProt:
D7M0P7
LinkDB
All DBs
Position
Unknown
AA seq
604 aa
AA seq
DB search
MENSVTQDGIATVLSNQSLDSSSVRPEIVVQVVDLKPVGNRYTFNANDGNMKMKAMLPAT
LTCEIISGKIQNLGLVRLLDYTVNDIPGKSEEKYMLITKCEAVASALDSEIKAEIKASTG
ITLKPKQEFVAKSASQIINEQRGNAAPAARMAMTRRVHPLVSLNPYQGSWTIRVRVTNKG
VMRTYNNARGEGCVFNVELTDEEGTQIQATMFNAAARKFYDRFEMGKVYYISRGSLKLAN
KQFKTVQNDYEMTLNENSEVEEASNEEMFTPEIKFNFVPIDELGTYVNQKDLIDVIGVVQ
CVSPTMSIRRKNDNEMIPKRDITLADESKNTVVVSLWNDLATGIGQELLDMADNHPVIAI
KSLKVGDFQGVSLSTISRSNVVINPDSPEAKKLKSWYDAEGKETSMSAIGSGMSSSANNG
SRSMYSDRVFLSHITSNPSLGEEKPVFFSIRAYISFIKPDQTMWYRACKTCNKKVTEAMD
SGYWCEGCQKKDQECSLRYIMAVKVSDSTGETWFSAFNDEAEKIIGCTADELNNLKSEEG
EVNEFQTKLKETTWSSHLFRISVSQQEYNSEKRQRITVRGVSPIDFAAETRLLLQDISKK
KTSQ
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atggagaactcagtgacccaagatggtatcgcgacagttttatcgaatcaatcccttgat
tcttcctctgttcgacccgaaatcgtcgttcaagtcgtggatcttaagcctgtcggaaat
cgatatacgtttaatgccaatgatggaaatatgaagatgaaagcaatgctaccagcgact
ttgacatgtgaaattatctctggaaagattcagaatctgggtctggttcgtctccttgat
tataccgtcaatgatattccaggcaaatcagaagaaaaatatatgcttataacaaaatgt
gaggccgttgcctctgcacttgactcagagattaaggcggagattaaagcttccacaggc
ataacgttgaaacctaagcaggagtttgttgccaaatcagcttcacagataatcaatgag
caaaggggaaatgctgcaccagctgcaagaatggctatgactagaagggttcatcctctt
gtgtctttgaacccttatcaaggaagttggactattagagttcgtgtcactaacaaagga
gtcatgagaacttacaacaacgccagaggagaaggatgtgtgtttaatgtggaactcact
gatgaggaaggaacacagattcaggcaacaatgtttaacgcagctgcaaggaagttttat
gacagattcgagatgggaaaggtttactatatatccaggggatcgcttaagcttgctaat
aagcagttcaagacagttcagaacgattatgagatgactctaaacgagaattctgaggtt
gaagaagctagtaatgaagaaatgtttactcctgaaattaaattcaactttgtacccatt
gatgagttgggtacatacgtgaatcagaaagaccttattgatgttatcggtgttgttcaa
tgtgtttctcctaccatgagcattagaaggaagaatgacaatgagatgatcccaaagagg
gatataactttggctgatgagtcaaagaatactgttgtggtgtccctttggaatgatttg
gcaactggcataggccaagaactgctagacatggctgataatcaccctgttatcgcgatt
aagtctctcaaagttggagattttcaaggtgtttcattgtcaactatcagcagaagcaat
gtggtgataaatcctgattctccagaagctaagaagttgaaatcttggtatgatgctgaa
gggaaagagacatctatgtctgctattggctctggaatgagttcttctgccaacaatgga
tcaagatccatgtattctgatagagtttttctctctcacatcacaagcaacccctcttta
ggcgaggaaaagcctgtattctttagtattagagcttacataagcttcatcaagccagac
cagacaatgtggtaccgtgcttgcaagacctgtaacaagaaagtgactgaggcaatggac
tctggctattggtgtgaaggttgtcagaaaaaggatcaagaatgcagtttaaggtatata
atggcggtgaaagtctctgattcaacaggtgaaacttggttttctgcattcaatgatgaa
gcagagaagattattggctgcacagctgatgaactcaataatctaaaatcagaggaaggt
gaagtgaatgagtttcagacaaaactgaaagaaactacttggtcatctcatctcttcagg
attagtgtttctcagcaagagtataacagtgagaagagacagaggataactgtaagaggt
gtttctccaattgactttgcagctgaaacaagattattgctccaagacatttccaagaaa
aagacatctcagtaa
DBGET
integrated database retrieval system
