Arabidopsis lyrata (lyrate rockcress): 9307500
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Entry
9307500 CDS
T01578
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
9307500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9307500
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
9307500
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
GTP_EFTU_D4
MMR_HSR1
Zn_ribbon_RanBP
PHD
C1_2
Motif
Other DBs
NCBI-GeneID:
9307500
NCBI-ProteinID:
XP_020876715
LinkDB
All DBs
Position
Unknown
AA seq
745 aa
AA seq
DB search
MPRKGLSNFDDYDDGFDDEDDAYDYDYDVDIEEHEEEEAAEPKEEIAKQGLWRCAICTYD
NDESMFVCDICGVLRHPVAGNQSINKTTNVFYAVEGRCKEPVVSKLAKSLFGSVPSNTPK
RAVLYLPAHKNLVMDQGTLPGISRGNIHDFHKAFSSKNSCVSIAPFKFDAPSPDDLVSNG
LTSSKTGPKASGDASMRQKEKQDSAEQKPFKKGGDSSETSSRGRHDKLDNSVSKGGAGGI
KSGKSLPKAKADMSNETSSSSKYLETSESLTGTMNKMSLIGETENSSDIKIRGPRSQSKH
KPEEWMLLDKESDALSQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQG
KGSFAYAWALDESAEERERGITMTVAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQAD
AAILVIDASVGAFEAGFDNLKGQTREHARVLRGFGVEQVIVAVNKMDIVGYSKERFDLIK
QHVGSFLQSCRFKDSSLTWIPLSAMENQNLVVAPSDNRLSSWYQGPCLLDVVDSVKSPDR
DVSKPLLMPICDAVRSTSQGQVSACGKLEAGAVRPGSKIMIMPSGDQGTVRSLERDSQAC
TIARAGDNVAIALQGIDANQVMAGDVLCHPDFPVSVATHLELMVLVLEGATPILLGSQLE
FHVHHAKEAATVVKLVAMLDPKTGQPTKKSPRCLTAKQSAMLEVSLQNPVCVETFSESRA
LGRVFLRSSGRTVAMGKVTRIIEDS
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtaaaggattatccaatttcgatgattatgatgatggttttgatgatgaggac
gatgcttatgattatgactatgatgtagatattgaagaacacgaagaagaggaagctgct
gaaccaaaggaagaaattgctaagcaagggctttggcgatgtgctatctgtacatatgac
aatgatgagagtatgtttgtgtgtgatatctgcggcgttcttcgtcatcctgtagcagga
aatcaaagtatcaacaagactacaaatgtgttttatgcagttgaaggcagatgcaaagaa
cccgtggtatccaaattggcaaagtcccttttcggatcagttccatctaatacaccgaaa
agggctgttctttatcttcctgcacacaagaatcttgtgatggatcagggaactctgcct
ggaatttcccgtgggaatattcatgatttccacaaggcctttagttctaaaaattcctgc
gttagtatagcacctttcaagtttgatgctccatcgccagatgatttagtctccaatgga
ctaacatcctcaaaaactggtccaaaagcctcaggtgatgctagtatgagacagaaggag
aagcaagatagcgcagaacagaaaccttttaaaaaaggaggagatagttccgaaacaagc
tcccgaggtagacatgataaacttgataatagtgtttcaaagggtggtgctggtggcata
aaatcgggaaaaagtttgccaaaagcaaaagcagatatgtctaatgagacaagttcttcc
tccaaatatttggagacgtcagagagtcttaccggtactatgaacaagatgtctttgatt
ggggaaacagaaaactccagtgatattaaaatcagaggaccaagatcacaatctaagcat
aagccagaggagtggatgcttcttgataaagaatcagatgcactaagccagcttaatctt
gccatcgtggggcatgttgattccggtaagtcaacactttcgggtagattattgcatcta
ttgggaagaatatcgcagaagcaaatgcataagtatgagaaagaagcaaagttgcagggc
aaagggtcctttgcatatgcctgggcattggatgagagtgctgaagagagagaacgagga
ataacaatgactgtggctgttgcttatttcaactccaaaagacatcatgttgttttgctc
gactctcctggacacaaagattttgttccaaacatgatagcaggagcaacacaagcagat
gctgcgattcttgtcatagatgcatctgttggtgcttttgaagctggttttgataatttg
aaaggccagacaagggagcatgcacgggttctgagaggctttggcgtggagcaagtcata
gttgcagtcaacaaaatggatattgttggctactcaaaggaaagatttgatttgattaag
cagcatgttggatcttttttgcaatcctgccgttttaaggattcttctctgacatggatt
ccattaagtgccatggaaaaccaaaacttggtggtagctccctctgacaatcgcctatcc
tcatggtatcaaggtccatgtttattggatgtcgttgactctgtcaagtctcctgataga
gacgtctcaaagcctctactcatgcctatatgtgatgctgtaagatcaacttcgcaaggg
caggtatctgcatgtggcaaacttgaagctggagctgttcggccaggatctaagataatg
attatgccatcgggagatcaaggaaccgtgcggtctctggagcgtgactctcaggcttgc
accattgcaagagctggagataacgtagcgatagctttgcaagggatcgatgcaaatcaa
gtaatggcaggagatgtattgtgccatcctgatttccctgtatcagtagcaactcatttg
gaattgatggtgctcgtcttggagggcgcaacaccgatcttgcttggttctcagttggag
tttcatgtgcatcatgctaaggaagcagcaacagttgtgaaacttgtggcaatgcttgat
cccaaaacagggcagccaacaaagaagtctcctcgttgtctaactgcgaaacagagtgca
atgcttgaggttagtctccaaaatccagtttgtgtggagacattttctgaaagtagagct
cttggaagagtgttccttagatcatcaggaagaactgttgctatgggcaaagttactcgg
attatcgaagactcataa
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integrated database retrieval system
