Arabidopsis lyrata (lyrate rockcress): 9307675
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Entry
9307675 CDS
T01578
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
9307675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aly03021
]
9307675
03036 Chromosome and associated proteins [BR:
aly03036
]
9307675
Transcription machinery [BR:
aly03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
9307675
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
9307675
PBAF complex
9307675
GBAF(ncBAF) complex
9307675
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIB
B1
YEATS
Motif
Other DBs
NCBI-GeneID:
9307675
NCBI-ProteinID:
XP_002873653
UniProt:
D7M610
LinkDB
All DBs
Position
Unknown
AA seq
534 aa
AA seq
DB search
MSGNNNNPQKPQGSAPSPFGNPGMASASVPGNQGFAQSQMAANFQAQFQFSQAQALAHAQ
AQSKVQAQLQAQLQAQGMTMNQAQGSPGIGGLGPSSPSLTTPGSLNMKRFQQKPPMRPPG
APASNNTISPMRTMELTPAARKKKQKLPEKSLQERVAAILPESALYTQLLEFESRVDAAL
TRKKVDIQEALKNPPCIQKTLRIYVFNSFANQNNTIPGNPNADPPTWTLKIIGRILEDGV
DPDQPGFVQKANPLHPKFSSFFKRVTVSLDQRLYPENPLIIWENARSPAPQEGFEIKRKG
NQEFAASIRLEMNYVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSF
FNCDAALQKVFGEEKLKFTMVSQKISHHLSPPPPIHLEHKIKLSGNNPAVSACYDVLVDV
PFPIQRDLNNLLANAEKNKEIEACDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINALI
ESQSKDLKVVAGEASRNAERERRSDFFNQPWVEDAVIRYLNRRPAAGNDGPGSW
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtaacaacaacaatccacaaaagcctcaaggctctgcgccttcgccttttggt
aatcctgggatggcctctgcatctgttcctggaaaccaaggctttgctcagtctcaaatg
gcagctaactttcaggctcagtttcagttctcacaagctcaagccctagcccatgctcag
gcacagtctaaagttcaagcacaactgcaagctcagttacaagctcaaggcatgacgatg
aaccaagcacaaggttctccggggattggtggcttgggtccttcttctccttctttgacg
actcctggaagtttaaacatgaagagattccagcagaaaccgccgatgcgacctcctggt
gctccagcgagtaacaacactatctcccccatgagaacaatggagttgactccagctgct
cggaaaaagaaacagaagcttccagagaagtcattgcaggagcgggtggcagcaatcttg
ccagagtctgccttatacacacaacttctggagtttgagtctcgggtcgatgctgcgtta
actagaaagaaagttgacatccaggaagcccttaaaaaccctccctgcatacagaagact
cttaggatctacgttttcaactcgtttgctaaccaaaacaacacgatccctgggaatcct
aatgctgacccgccaacatggactcttaaaattattggtaggatcctggaagatggggtg
gatcccgaccagccaggatttgttcagaaagcaaacccattgcatcccaaattctcgtct
ttcttcaaaagggttacagtttccctggatcagaggctgtatcctgagaacccattgatc
atatgggagaatgctcgatcacctgctccccaggaagggtttgagataaagaggaaaggg
aatcaggagtttgcagctagtatacggttggagatgaactacgtccctgaaaagttcaag
ctttctactgcattgatggatgttctcgggattgaggttgaaacccgcccaagaatcatc
gctgcaatttggcattacgttaaggcgaggaaactgcagaacccaaatgacccctctttc
ttcaactgtgatgctgcacttcagaaagtttttggggaagaaaagttgaaattcactatg
gtctctcagaaaatatctcatcacttgtcgcctccaccacctattcacttggaacacaaa
atcaagctctcaggaaataatccggccgtatcagcatgttacgatgtgctagtggatgta
cccttcccgatccaaagggatctgaacaatttgctagccaacgcagagaagaacaaagag
attgaggcttgtgatgaagcaatatgtgcagccataaggaaaatccatgagcataggagg
aggcgggcatttttcttggggttcagccaatcgccagttgaattcataaacgccctgatc
gaatctcagagcaaggatctgaaggtcgtagcgggagaagccagtcgaaatgctgagaga
gaacgtcgatcggacttcttcaaccaaccttgggtggaagatgcagttatacgttacttg
aaccggagaccagcagctgggaacgatgggccagggagttggtga
DBGET
integrated database retrieval system
