Arabidopsis lyrata (lyrate rockcress): 9307705
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Entry
9307705 CDS
T01578
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9307705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
9307705
03009 Ribosome biogenesis [BR:
aly03009
]
9307705
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
9307705
Spliceosome [BR:
aly03041
]
Complex A
U2 snRNP components
U2 related factors
9307705
Complex B
9307705
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
9307705
Ribosome biogenesis [BR:
aly03009
]
Eukaryotic type
90S particles
Helicases
9307705
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
ABC_tran
AAA_19
nSTAND3
SRP54
PhoH
AAA_7
AAA_30
ATPase
TsaE
T2SSE
FtsK_SpoIIIE
AAA_29
AAA_24
Motif
Other DBs
NCBI-GeneID:
9307705
NCBI-ProteinID:
XP_020877570
LinkDB
All DBs
Position
Unknown
AA seq
681 aa
AA seq
DB search
MDMMKKAYSARYFEILEKRKNLPVWVHKEEFLQTLKENQIVLLVGKTGSGKTTQIPQFVL
EAVLNENPSSGPKGKKWLVGCTQPRRVAAMSVSRRVAEEMDVEIGEEVGYTVRFEDCSSS
KTVLKYLTDGMLLREAMADPLLGRYKVIVLDEAHERTLATDLLLGLLKQTLISRPDLKLV
VMSATLEADKFQKYFIGVPLIKVPGRLHPVEILYTREPERDYLEAAISTVIQIHMCEPPG
DVLVFLTGEEEIEDACRKIISKLGDQVKVVPLYSTMSPAMQQKIFDPTPQSVRKIIVFTN
IAETSLTIDGIVYVVDPGFSKQKLYHPDTRVESLLVSPISQASADQRAGRAGRTQPGKCF
RLYTQKSFNELEKQSSAEILRSNLANTVLTLKRLGVKNLVRFDLMDAPAPETLARALDDL
YHLGALDDDCNLTNTGEMMSEYPLDPQMAKMLIVSPQFNCSNEILSISAMLSVPNCFIRP
RGEAQKAADEAKSSFAHIDGDHLTLLNVFHAFLQNNQDSDWCYEKFINYRAMKSAVSVRE
QLVRIMSRFQIKLCSPGFNSRDYYVNIRKALLAGYFMQVAHLERTGHYLTFRDKDDQVVH
LHPSNCLDHKPEWVVYNEYVFTSRNFIRTVTHIRGEWLVDVAPHYYKLANFPNSEAKRVL
QKHYKKRKLSEERSCKLYLLR
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggatatgatgaagaaggcgtattctgcacggtatttcgaaatactggagaagcggaag
aatctaccagtgtgggttcacaaagaagagtttcttcaaacgttgaaggagaatcagata
gtgctattggtgggtaagaccggaagtggtaaaacaacacagatcccacagtttgtttta
gaagcagtgctcaatgaaaaccctagctctggtcctaaggggaagaagtggttggttggg
tgcacgcagcctcgtagagttgcagccatgtctgtgtcgcgtcgtgtagctgaagagatg
gatgtagagatcggggaagaagttggttacaccgttcgttttgaggattgcagcagctcc
aaaacggtcctcaagtacctaaccgatggtatgcttctgagagaagcaatggcggatccg
ctgttagggagatacaaagtgattgttctcgacgaggcgcatgagagaactttagccacg
gatttgctattaggtcttcttaaacaaaccttaattagtcgacctgatcttaagcttgtt
gtgatgagtgcaaccctagaagccgacaagttccaaaagtattttattggtgtgcctctt
attaaagtccctggtaggctccatccagtggaaatcttgtatactcgagaacccgagagg
gactatctcgaggctgcgattagtactgttatccagatccacatgtgtgagccacctggt
gatgttcttgttttcttaacaggggaagaagaaattgaagatgcttgccgcaaaatcatc
agtaaacttggagatcaagtcaaagtcgtgccattgtattccactatgtcacctgctatg
caacagaagatatttgatcctacaccgcagtcagtgagaaagatcattgtattcaccaac
attgcagagacttctttaaccattgatggaattgtttatgtggttgatcctggtttctcc
aagcagaagctctaccacccagacactcgtgtggaatccttgttagtgtccccaatatca
caggcaagtgctgaccagagagctggtcgtgccggtagaacacagcctggaaaatgtttc
aggctttacacacagaaaagtttcaatgaattggagaagcagagttctgctgagatacta
agatcaaaccttgcaaacacagttctgaccttgaaaagactgggtgtgaaaaacttggta
cgctttgatcttatggatgctcctgctcctgagaccctcgctcgggccttggacgatttg
tatcatttgggagcactagatgatgactgtaacttgacaaatacaggtgagatgatgagt
gagtatcccttagacccacagatggcaaagatgctcatagtcagtcctcaattcaactgc
tcaaacgagattctttcgatttccgcgatgttatcagtaccaaattgtttcatcaggcca
agaggagaagctcaaaaagcagcagatgaagccaaatctagttttgcacacattgatgga
gaccacctcacactcttgaatgtgttccacgctttcttgcaaaacaaccaagactcagat
tggtgctacgaaaaattcataaactacagagcaatgaagtctgcagttagtgtaagagag
cagctggtccggatcatgtcgaggtttcagattaagttgtgcagcccaggtttcaacagc
cgcgactattacgtcaacattagaaaggccttgcttgccggttatttcatgcaagtggct
cacctagaacgcactggccactacttgacgttcagagataaggacgaccaagtggttcac
ttgcatccttccaattgcttggatcacaaaccggagtgggtggtttacaacgaatatgtt
ttcactagccgaaatttcatccgaactgtcacacatattcgtggtgaatggctagtagat
gttgcaccacattactataagcttgccaactttcccaattctgaggctaaacgagtactt
caaaagcactataagaagaggaaactgtcagaagaaaggagttgtaaattgtaccttttg
cgctag
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