Arabidopsis lyrata (lyrate rockcress): 9307734
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Entry
9307734 CDS
T01578
Name
(RefSeq) probable ubiquitin conjugation factor E4 isoform X1
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly04120
Ubiquitin mediated proteolysis
aly04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
9307734
04120 Ubiquitin mediated proteolysis
9307734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
aly04121
]
9307734
Enzymes [BR:
aly01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
9307734
Ubiquitin system [BR:
aly04121
]
Ubiquitin ligases (E3)
U-box type E3
9307734
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
9307734
NCBI-ProteinID:
XP_020876565
LinkDB
All DBs
Position
Unknown
AA seq
1038 aa
AA seq
DB search
MATSKPQRSPAEIEDIILRKIFYVTLTESADSDPRIVYLEMTAAEILSEGKELLLSRDLM
ERVLIDRLSGDFSDAEPPFPYLIGCYRRAYDESKKIQSMKDKNLRSEMEIVTKQAKKLAV
SYCRIHLGNPDMFGNSDKPTGGLDNRLKKRNVSPVLPLIFAEVGSGSLDMFGASSSGVQA
PPGFLDEFFKDSDFDSLDPILKELYEDLRSTVINVSVLGDFQPPLRALKYLVSLPVGAKS
LVSHQWWVPRGAYMNGRAMELTSILGPFFHISSLPDNKLFKSHPDVGQQCFSEASERRPA
DLLSSFSTIKNLMNILYSGLHDVLMILLKSTDTRECVLQFLAEVINANAARGHIQVDAVS
CASSGMFVNLSAVMLRLCEPFLDPHLTKRDKIDPKYAFCGHRLKLSDLTALHASSEEVSE
WIGKDAMANVYGAGRENGNESRLLQSKEATSSSSNASGQNAKSATKYTFICECFFMTARV
LNLGLLKALSDFKHLAQDISRGEDNLATLKAMRDQAPSPQVELDIARMEKELELYSQEKL
CHEAQILRDGDFIQRALSFYRLVVVWLVGLAGGFKMPLPSTCPMEFSCMPEHFVEDAMEL
LIFASRIPKALDGVPLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWMPRSSSSSSAT
STLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNA
WRRIAKDEEKGVYLNFLNFLVNDSIYLLDESLNKILEIKQIEAEMSNTAEWEQRPTQERQ
ERTRLFHSQENIVRIDMKLANEDVTMLAFTSEEITAPFLLPEMVERVANMLNYFLLQLVG
PQRKSLSLKDPEKYEFRPKQLLKQIVRIYVNLARGDTENIFPGAISSDGRSYNEQLFNAG
ADVLRRIGEEGRIIQDFMELGTKAKAAASEALDAEAALGDIPDEFLDPIQYTLMRDPVIL
PSSRITVDRPIIQRHLLSDNHDPFNRAHLTSDMLIPDIALKAKIDEFVKSHQSKKRTSGE
DSSNKERIQTTSSDMLID
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgagcaaacctcaaagatcgccggctgaaattgaggatattatcctccggaag
atattttatgtaaccctaacggaatcagctgattccgatcctcgaattgtttacttggag
atgacggccgctgagattctcagcgaaggtaaagagcttttgctttctcgtgatttgatg
gagagggttctcatagatcgtctctccggcgacttttccgacgctgaaccgcctttcccg
tatttaatcggttgctaccgtcgtgcttacgacgaatcgaagaaaatccagtcgatgaag
gataagaatctgagatcggagatggagattgtgactaaacaggcgaagaagcttgctgtt
tcttactgtaggattcacttggggaatcctgacatgtttgggaactcggataaacctacc
ggtggactggataataggttgaagaagaggaatgtgtctccggttctgccgttgatcttt
gctgaggttggttctggttcgttggatatgtttggagctagtagcagtggggttcaggct
cctccggggtttttggatgagttcttcaaagactcagattttgatagcttggacccgatt
ctaaaggagctgtatgaggatttgaggtctacggttataaatgtatcagtgcttggagat
ttccagccaccattgagggcacttaagtatcttgttagcttaccagtaggagctaaatct
ctggttagtcaccagtggtgggttccacggggcgcctatatgaacggccgagcaatggag
ttgactagcattcttggccctttcttccatattagctcgctgccagataataagctattc
aagagtcatcctgatgttgggcagcagtgtttctctgaagcatcggaacgtcgtcccgca
gatttattatcatccttctccacgattaaaaatctcatgaacattttgtacagcgggctg
catgatgtactgatgattttacttaaaagtaccgatacccgtgagtgtgttttacagttt
cttgcagaggtgatcaatgcaaatgcggcgagaggccatatacaggttgatgcagtctct
tgtgctagctcaggcatgtttgttaacctcagtgcagtaatgctccggctctgtgaacca
tttttagacccacatttaactaaaagggataagattgatccaaaatatgcattctgtggt
catcgcttaaaattaagcgacttgactgctctccatgcatcatccgaagaagtttctgag
tggattggcaaagatgctatggcaaacgtatatggtgctgggcgagaaaacgggaacgaa
agtcgcttgttacaatccaaagaagccacaagttctagtagtaatgcttctgggcaaaat
gcaaagtcagcaactaaatacactttcatttgtgaatgcttctttatgactgcgagggtc
ctcaatttgggtctcctaaaagcactctctgactttaaacatcttgctcaggacatctcg
agaggtgaagataatcttgcaacactaaaagccatgagagatcaagcaccttctccacag
gtggaacttgatatagcccgaatggaaaaagaactagagctgtattcgcaggaaaagctt
tgccatgaggcccaaatattgagggatggagattttattcagcgagctctttctttctat
cgcctagtggttgtttggttagttggactagctggtggctttaagatgcctctaccgtca
acttgccccatggaattctcctgtatgcctgagcattttgttgaagatgcaatggagttg
ctgatattcgcttcaagaatccccaaagctttggacggggtgccgctggacgactttatg
aacttcataattatgttcatggcaagtcctgaatatattagaaacccatatctcagagca
aagatggttgaagttctgaactgctggatgcctcgttcaagcagttcttcttctgctacg
tctactctctttgaggggcatcagttatcactcgagtatcttgtcaggaatttactgaaa
ttatatgttgacattgagttcacgggttcacacactcagttctatgacaagttcaatatt
cgccacaacattgctgagctattagagtatctctggcaggtgcctagtcaccgaaatgcg
tggagacggattgcaaaagacgaagagaagggcgtgtacttgaacttcttaaacttttta
gtcaatgatagcatctatcttctggatgaaagtctaaacaaaattctcgagattaaacaa
atcgaggcagagatgtcgaatactgcagagtgggagcagagaccaactcaagagagacag
gagagaacaagactcttccattcgcaggagaatattgttagaatcgacatgaagctggca
aatgaagatgtgactatgcttgcatttacatccgaggagatcactgccccttttctacta
cctgagatggttgagagggttgccaatatgcttaactacttcttgctacaactcgtgggt
ccacagcgtaaatcgttaagcttgaaagatcctgagaagtatgaattccgtccaaaacag
ttacttaaacagattgttcgcatatatgttaatctcgcaagaggagacacggaaaacata
ttccctggtgccatttccagtgatggccgatcatataacgaacagctattcaacgcagga
gcagatgtgcttagaagaataggtgaagagggaagaatcattcaagattttatggagtta
ggcacaaaagccaaagctgctgcttctgaagctctggatgctgaagctgcacttggcgac
ataccagacgagttccttgacccaattcagtacacactaatgagagatccagtgattctt
ccaagctcaagaatcacagttgatcgacccatcattcaacgtcatcttctcagcgacaat
cacgatccgtttaaccgagcacatttgacatcggatatgttgataccggacatcgcattg
aaggcgaaaatcgatgagtttgtgaagtcgcatcagtctaagaaacgaacaagtggagaa
gatagcagcaacaaggaaaggatacagactacaagcagtgatatgttaattgattaa
DBGET
integrated database retrieval system
