KEGG   Arabidopsis lyrata (lyrate rockcress): 9307815
Entry
9307815           CDS       T01578                                 
Name
(RefSeq) protein SMG9 isoform X2
  KO
K18735  protein SMG9
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:aly00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aly03019]
    9307815
Messenger RNA biogenesis [BR:aly03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Other surveillance factors
     9307815
SSDB
Motif
Pfam: NB-ARC ABC_tran MMR_HSR1 AAA_29 AAA_16 AAA_23 MeaB RsgA_GTPase DO-GTPase2 AAA_21 AAA_18 AAA_19 AAA_15 AAA AAA_30
Other DBs
NCBI-GeneID: 9307815
NCBI-ProteinID: XP_002873799
UniProt: D7M898
LinkDB
Position
Unknown
AA seq 381 aa
MAGSSGGSQMSSPAAPKILLAKPSVSPITGKFGRGNSDDDNASHRSRLPPVSSLNMLSDS
WDFHIDRFLPFLTENTDFTVVGVIGPPGVGKSTILNAIYAFDGSSPGMLPPFSVQSDEIK
AAAKHCTIGIEPRVSAERFILLDVQPVFSPSILAEIIRPDSSSSVPVLGSDSLSAELAHE
IMCIQLGVLLASICHVLLVVSEGVHEDNMWHLMSTVDLLKHAIPDPSSPALSRLQISEIG
PEMEFKDKLSEGNEYMATPIFVHSKLQDQDLSPKNILQLRKALAQYFESSSFTAGRNGSE
LVEPVSSVIPSKSSRNQHESYQLAMWKLRDQVLSSKSTSFSRPVSEREWLKNSAKIWEMV
KNSPIIAEYSRALQSSGMFRR
NT seq 1146 nt   +upstreamnt  +downstreamnt
atggctggttcttcaggcggaagccaaatgtcatcaccggcagctcctaaaatccttctt
gctaaaccgtccgtttctccgattaccggtaaattcggacgcggcaactccgacgacgat
aatgcttcgcaccgctctcgtctccctcctgttagctctctgaatatgctctccgattct
tgggattttcacatcgatcgctttctccctttccttactgagaatacagacttcacggtg
gttggagtgattggacctccgggtgttggcaaatcgacaattttgaatgcaatctacgcc
tttgatgggagctcccctggaatgctaccgccattttctgtacagtctgacgagatcaaa
gcagcggcaaaacattgtactattggcattgaaccaagagtttccgctgagaggttcatc
cttcttgatgttcagcctgttttcagtccatccatattggctgagattatcagacctgat
agttcatcctcagtaccagtcttgggcagtgactctctgtcggctgagttggctcacgaa
atcatgtgcatccagcttggtgtcctcttagcatccatttgtcacgtgttgctggtggta
tctgaaggagttcatgaagataacatgtggcatctgatgtcaacggtggatttgttgaag
catgcaatacctgatccatcttctcctgcactttcccgtctacagatctctgagattggg
cctgaaatggaatttaaggacaaattatctgagggaaatgaatatatggctactcccata
tttgtgcactcaaagcttcaggatcaagatctctctccaaagaatatcttgcaactaaga
aaggcactggcgcagtatttcgaatcaagttcattcacagcaggaaggaatgggtcggag
ttagtcgagccggtttcttctgtgattccatctaaaagctcgagaaaccagcacgagagt
tatcaattagcaatgtggaaactaagggatcaggttttgtcttctaaatctacgtccttt
tcaagaccagtctctgaacgggagtggctgaaaaactcagcaaagatatgggagatggtg
aagaattctccgatcattgcagagtacagtagggctcttcaaagttccggtatgtttcgg
aggtag

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