Arabidopsis lyrata (lyrate rockcress): 9307823
Help
Entry
9307823 CDS
T01578
Name
(RefSeq) probable polygalacturonase At3g15720 isoform X2
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly00040
Pentose and glucuronate interconversions
aly01100
Metabolic pathways
Module
aly_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
9307823
Enzymes [BR:
aly01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
9307823
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
9307823
NCBI-ProteinID:
XP_002873816
UniProt:
D7LWY1
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MGRPKMKSSLLFFLLCLFQINKLGFCLEEEAQKSKNGVGSNGFISVTSFGAIGDGETDDT
KAFLKAWEAVCKGGRNTKILVPQGKTFMLKPLAFIGPCKSSSISFSIRGNLVAPGYTWYA
GRYPTWISFDSINGLVVTGGGTIDARGSLWWGNVNTRPSAMHFNNCNGLRISNLRHLNSP
RNHVGLSCSQNIEVTGIRMTAPGDSPNTDGIDISNCKGVHIHDSVIATGDDCIAINSGSS
HINITGIFCGPGHGISVGSLGVTGDFATVEEVRVKNCTFTNTQNGVRIKTYQNGSGYARK
ISFEDIIMVASENPIIIDQTYHNGGTNGGRSKSSNSYQNCHLAAKQRTQSGNGKGVRVSD
VRYSSIRGSSASDQAITLNCDADLGCSDIVMNNVNMVSATFGHKVFATCKNAHGSFFASK
VNCLKKY
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgtccaaagatgaaatcttcgttgttgttcttcttgttatgtttgtttcaaata
aacaaattaggtttctgcttagaagaagaagctcaaaagtctaaaaacggagttggaagc
aatggattcataagtgtcactagtttcggagctattggtgatggagagaccgatgatact
aaggcttttcttaaggcatgggaagctgtatgcaaaggaggacgcaatacaaagattcta
gtgcctcaagggaaaaccttcatgcttaagcctcttgcattcatcggtccatgcaagtct
tcttctatctccttctcgataagaggtaatcttgtggcaccgggttacacttggtatgcg
ggaagatatccaacatggattagttttgacagtatcaacggtcttgttgtcaccggaggt
ggcaccatcgacgctcgtggttctttgtggtggggcaacgttaatactcgcccctccgca
atgcacttcaacaactgtaatggtcttaggatatctaatctccgacatttgaacagtcct
cggaaccatgtaggtctaagttgttcacagaacatcgaggtcacgggtataaggatgaca
gcccccggtgatagtcccaacacggatggtattgacatatcaaactgtaaaggagtccac
atacatgactctgtgattgccactggagatgactgcatcgccattaatagtggttcctct
catatcaacataaccggcattttctgtggccccggtcacggcatcagcgtaggaagtctt
ggagtaactggagattttgcaactgttgaagaagtgagggtaaagaactgcacttttaca
aacacacagaatggtgtccgaatcaagacataccagaatggatcaggatatgctcggaaa
atctcattcgaggatatcatcatggttgcctcagagaaccctattatcatagaccagact
taccacaatggaggcacgaacggaggaagaagcaagtcatctaatagctatcaaaactgt
catttagcagcaaaacaacggactcagtccggtaatggcaaaggcgtgagagtgagtgat
gtgcgttactctagtatccgtgggtcatctgcaagcgatcaagccattacattgaactgc
gatgcagacttgggatgctcagatatagtgatgaacaatgtgaatatggtttcagcgaca
tttggtcacaaggtgtttgctacctgcaaaaatgctcatgggtctttttttgcttcaaaa
gtgaattgtctgaaaaagtattaa
DBGET
integrated database retrieval system
