Arabidopsis lyrata (lyrate rockcress): 9308273
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Entry
9308273 CDS
T01578
Name
(RefSeq) probable 28S rRNA (cytosine-C(5))-methyltransferase
KO
K15264
25S rRNA (cytosine2278-C5)-methyltransferase [EC:
2.1.1.311
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aly03009
]
9308273
Enzymes [BR:
aly01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.311 25S rRNA (cytosine2278-C5)-methyltransferase
9308273
Ribosome biogenesis [BR:
aly03009
]
Eukaryotic type
Other ribosome biogenesis factors
9308273
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Methyltr_RsmB-F
NSUN5_N
NSUN5_fdxn-like
Methyltransf_25
Ubie_methyltran
PCMT
Methyltransf_31
FtsJ
RsmF-B_ferredox
Methyltransf_4
Methyltransf_15
TRM
ASPP2-like_RA
Motif
Other DBs
NCBI-GeneID:
9308273
NCBI-ProteinID:
XP_002872204
UniProt:
D7M4Q3
LinkDB
All DBs
Position
Unknown
AA seq
514 aa
AA seq
DB search
MARRHKPKTPPAKQRFSGAESHKPKTPPATKQSFSAAERSALYARREAANVLRSILRGDA
ERRAVASIKSLVFSPSVRNKRATFALVCETLKHLTVIKDVLEIANVLNSKWKRQEPLVYI
ICYDILFGKDTPSIGDAEKFLMRHKDALLSGLATLLVRKKVESVDQLLGLSKLNGHLKPR
YVRVNTLKMDVDSAVQELEKHYTVQRDETVPDLLVLPPGSDLHAHRLVANGRIFLQGKAS
SMVAAALQPEAGWEVLDACSAPGNKTIHLAALMQGQGKIIACELNEERVKRLEHTIKLSG
ASNIQVFHGDFLGLNPKDPSFVKVRAILLDPSCSGSGTITDRLDHLLPSHSADNMNYDSM
RLHKLAVFQKKALAHALSFPQVERVVYSTCSIHQIENEDVVSSVLALASSLGFKLATPFP
QWQRRGLPVFAGSEHLLRMDPVEDKEGFFIALFVKTNKLDNPKPSELPERECRRRRKERT
MQLHPFLCPKMFRALSRTLHRRRRKPVLCINSED
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgtcggcacaaaccaaaaacgccgccggcaaaacaaagattttccggcgctgag
agtcacaaaccaaaaacaccaccagctactaaacaaagcttctccgccgccgagagatca
gctctctacgccagaagagaagcagctaacgtactccggtccattctccgtggtgacgcc
gagcgacgagctgttgcttccatcaaatcactcgtctttagtccttccgttcgcaacaaa
cgcgccactttcgctctcgtctgcgaaactctcaaacatcttactgtgattaaagatgtt
cttgaaatagctaatgtgttgaatagtaaatggaagaggcaagagccattggtttacatt
atttgctacgatatcctctttggcaaggatactccatcaattggtgatgcagagaagttt
cttatgcggcataaagatgcgttgttgtcaggtttagctacgcttttagtgagaaagaaa
gtcgaaagtgttgatcagttgttgggtctttctaagcttaatggtcatttgaaaccacgt
tatgttcgtgtaaatacacttaagatggatgtggattccgcagtgcaggagctggagaaa
cattatacggtgcagagggacgagacagttcctgacttgttggtgttgccccctggcagc
gatttgcatgctcatcgtttggttgcgaatgggcgtatatttttgcaggggaaagcaagt
tcaatggtagcagcagcacttcagccagaagcaggatgggaggttcttgatgcctgttca
gctccaggaaacaaaactattcatcttgctgctcttatgcaaggacaaggaaaaatcata
gcatgcgagctaaatgaagaacgagtaaagcgtttggaacatactataaagctgtctggt
gcctccaatatccaagtctttcatggtgattttttgggcttaaatccgaaagatccttct
tttgtgaaggttcgggctatattgttggatccgtcttgctctggctccggcaccataaca
gatcgtttggaccatctcctcccttctcattcagcagataacatgaactatgactccatg
aggttacacaagctcgctgttttccagaaaaaggctcttgcccatgcactctcctttcca
caggtcgagagagtagtatacagcacatgctccatccaccaaatagaaaacgaagatgtg
gtctcatccgttttagctctggcttcatccttgggctttaaactcgctaccccttttcct
cagtggcagcgtcgtggtctccctgtatttgcaggatcggaacatctactcagaatggat
ccggtggaggacaaagaagggttcttcatcgctttattcgtcaagacaaacaaactcgat
aacccaaagccgtctgaacttcccgaaagagagtgtagacgaagacgcaaagaaagaacc
atgcaattacatccctttctttgtcccaaaatgttcagagctttgagtcggaccttgcac
aggcgcaggaggaaacccgtattatgtatcaactcagaagactag
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