KEGG   Arabidopsis lyrata (lyrate rockcress): 9308329
Entry
9308329           CDS       T01578                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03030  DNA replication
aly03410  Base excision repair
aly03420  Nucleotide excision repair
aly03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    9308329
   03410 Base excision repair
    9308329
   03420 Nucleotide excision repair
    9308329
   03430 Mismatch repair
    9308329
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aly03032]
    9308329
   03036 Chromosome and associated proteins [BR:aly03036]
    9308329
   03400 DNA repair and recombination proteins [BR:aly03400]
    9308329
DNA replication proteins [BR:aly03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    9308329
  DNA Replication Termination Factors
   ELG1-RFC complex
    9308329
Chromosome and associated proteins [BR:aly03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    9308329
DNA repair and recombination proteins [BR:aly03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     9308329
  Check point factors
   HRAD17(Rad24)-RFC complex
    9308329
SSDB
Motif
Pfam: RFC_C DNA_pol3_delta2 RCF1-5-like_lid AAA Rad17 Sigma54_activ_2 AAA_lid_RFC1 AAA_22 DUF815 AAA_5 RuvB_N nSTAND6 ABC_tran AAA_23 AAA_29 Mg_chelatase RsgA_GTPase AAA_2 AAA_24 AAA_16 T2SSE NB-ARC nSTAND3 ATPase_2 FtsK_SpoIIIE TsaE nSTAND1
Other DBs
NCBI-GeneID: 9308329
NCBI-ProteinID: XP_020876942
LinkDB
Position
Unknown
AA seq 354 aa
MLWVDKYRPKSLDKVIVHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLKQIYG
ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN
RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR
CLNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNY
PFTGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHE
LLKKLDSELKLEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKNFLISTFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgttgtgggtcgacaagtacaggccgaaatcactcgacaaggtcatcgttcatgaagat
atcgcccaaaatctcaagaaattggttaccgagcaagattgtccgcatttgctcttctat
ggaccgtcaggttctggtaagaaaaccctaattatggcgcttctcaagcagatatatggt
gccagtgcagagaaggtcaaagtggagaacagggcgtggaaagttgatgctgggagtaga
actattgatctggagctcactacattgtcaagcaccaatcatgtggaacttactccaagt
gatgcaggctttcaggatcgatatatcgttcaggagataattaaagaaatggccaagaac
agaccaattgacacgaaaggaaagaagggatataaggtgttggtattaaatgaggttgac
aagctctcacgagaagctcaacattctctgcggagaacaatggagaaatacagctcatct
tgccgtctcatcttatgctgtaacagctcttcgaaggttaccgaagccattaagtctcgt
tgtctcaatgtacgcataaatgcaccttcgcaggaagagatagtgaaagtgttggagttc
gttgcaaagaaagaaagtctgcaactgccccagggttttgctgctcgtattgctgaaaaa
tcaaatcgcagtctaagaagagctattttgtcacttgagacttgtcgtgtccaaaactat
ccgttcacaggtaaccaagtgatatctcccatggattgggaagagtatgttgctgaaata
gcaactgacatgatgaaggaacaaagccctaaaaagttatttcaggtgcgtggaaaggtg
tacgaattgctagttaactgcattccaccagaagtcattctaaagagacttcttcatgaa
ttgctgaagaaactggactcagagctgaagcttgaagtctgtcactgggccgcatattat
gaacatcggatgcgattaggtcagaaagccatatttcacatagaagcatttgtggccaag
tttatgagcatatacaaaaatttcctcatttcaacatttgggtag

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