Arabidopsis lyrata (lyrate rockcress): 9308732
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Entry
9308732 CDS
T01578
Name
(RefSeq) transcription initiation factor IIF subunit alpha
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
9308732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aly03021
]
9308732
Transcription machinery [BR:
aly03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
9308732
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
9308732
NCBI-ProteinID:
XP_020877661
LinkDB
All DBs
Position
Unknown
AA seq
542 aa
AA seq
DB search
MSNCLQLKPACMGCGSQSDLYGSSCRHMTLCLKCGRTMAENKAKCLDCGTVLTRLIREYN
VRAAAPTDKNYFIGRFVTGLPNFKKGSENKWSLRKDIPQGRQFTDAQREKLKNKPWILED
ETGQFQYQGHLEGSQSATYYLLVMQNKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN
RRKTADGYQRWMMKAANNGPALFGEVDNDKESGGSSGGGGRGRKKSSGGDEDEGNVSDRG
EEDEEEEASRKSRLGLNKKSNDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAVG
NDPEEREDLLAPEIPAPPEIKQDEDDEENEEEEGGLSKSGKELKKLLGKANGLNESDEDD
DDDSDDEEETNFGPVTNSKQKEVAKEEPVENAPAKPTPSGPSRGTPPAKPSKGKRKLNDG
DSKKPSSSVQKKVKTENDPKSSVKEERANTVSKSNTPTKAVKAEPASAPAASSSAATGPV
TEDEIRAVLMEKKQVTTQDLVSRFKARLKTKEDKNAFANILRKISKIQKNAGSQNFVVLR
EK
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaactgtttgcaattgaaaccggcttgtatgggatgtggatcacaatccgatttg
tatggaagctcttgtagacacatgacgttgtgtttgaagtgtggtagaaccatggctgag
aataaagctaagtgtctcgattgtggaaccgtccttacgcggttgattcgggagtataac
gttcgtgctgcggcaccgacggataagaactacttcattggtagatttgtgactggtctt
cctaatttcaagaaaggttctgagaataaatggtctcttcgtaaagatatacctcaaggt
cgtcagtttactgatgcacaacgggagaagttaaagaacaaaccttggatcttggaagat
gaaactggacagtttcagtaccaaggacatcttgaaggctctcagtctgctacttactat
ctcttagtgatgcagaacaaagagtttgtcgcgattcctgctggttcttggtataacttc
aacaaggttgcacagtataagcaacttactttggaagaagcggaagagaagatgaagaat
cggagaaaaactgctgatgggtatcaaaggtggatgatgaaagctgcgaataatggtcca
gcgttgtttggggaagtggataatgacaaagagagtggtggaagcagcggaggtggtggt
aggggtcgtaaaaagtcatcaggtggtgatgaagatgaaggaaatgtctctgacagaggg
gaggaagatgaagaggaagaggcatcgcggaaaagtagacttggacttaataaaaagagt
aatgatgatgatgaagaaggtccaaggggtggtgatcttgacatggatgatgatgacatt
gagaagggggatgactgggagcatgaggaaattttcaccgatgatgacgaagcagtcggt
aatgatcctgaggaacgtgaagatcttctggctcctgaaattcctgctcctccagaaata
aagcaggatgaagatgatgaagaaaatgaagaagaggagggagggttgagcaaatctggt
aaagagttaaagaaactgcttggtaaggctaatggtttgaatgaatctgacgaagacgat
gatgacgattctgatgatgaggaggagacaaactttggtccagttacgaattctaaacag
aaggaggtggcgaaagaagaacctgttgaaaatgcacctgcaaaacctacaccatctgga
ccttctcgtggaacacctcctgcaaaaccatctaagggaaagagaaaactaaacgacggc
gattctaaaaagcctagcagctctgttcaaaagaaagtgaagactgaaaatgatccgaaa
tcttcggtgaaagaagagagagcaaacacagtttccaaatccaacacaccaacaaaagct
gtgaaagctgaaccagcttcagctcctgcagcatcatcctcagctgcgactgggcctgtg
actgaagacgaaattcgcgctgttctgatggagaagaagcaagtcactacacaggacctt
gtttccagatttaaggcaagacttaagaccaaagaggacaagaatgccttcgccaatatt
ctgaggaagatctcaaagatacagaagaacgctggttctcaaaacttcgtcgttttgaga
gaaaagtga
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