Arabidopsis lyrata (lyrate rockcress): 9308797
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Entry
9308797 CDS
T01578
Name
(RefSeq) LOW QUALITY PROTEIN: exosome complex exonuclease RRP46 homolog
KO
K12590
exosome complex component RRP46
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9308797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9308797
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
9308797
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
Motif
Other DBs
NCBI-GeneID:
9308797
NCBI-ProteinID:
XP_020877202
LinkDB
All DBs
Position
Unknown
AA seq
158 aa
AA seq
DB search
MLLQFFKLDLFFDLKYNPGKKLTCQLRPLACSRNILHRPHGSASWSEGDTKVLAAQYGLK
AVMKKNENAEKAYFEVIWKPXTGXIGKVEREYETILKRTLQNICVLTVVPNTTTSVIIQV
VHDGGSVSFLCSLHLGKHLLMLSETHIIRYKQCLFEYL
NT seq
477 nt
NT seq
+upstream
nt +downstream
nt
atgttgttacaattttttaaattagatctattttttgacttgaaatataacccgggaaaa
aaacttacttgtcagctgagacctcttgcttgttcccgtaatatccttcatcgtcctcat
ggctctgctagttggtcagaaggggatacaaaagttctagctgcacaatacggacttaaa
gcagtaatgaagaagaacgaaaatgctgagaaggcttattttgaagtcatatggaagcca
taaaccggatagattggaaaagttgaaagggagtatgaaacgatactgaaaaggacgcta
cagaatatttgtgttttgacagttgttccaaataccaccacctcagtgataattcaagtt
gtacatgatggtggttctgtatcttttttatgttccttgcaccttggtaaacatttactg
atgctgtctgaaacacatataatccggtataaacaatgtctgtttgagtatttatag
DBGET
integrated database retrieval system
