Arabidopsis lyrata (lyrate rockcress): 9308846
Help
Entry
9308846 CDS
T01578
Name
(RefSeq) LOW QUALITY PROTEIN: protein STABILIZED1
KO
K12855
pre-mRNA-processing factor 6
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9308846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
9308846
Spliceosome [BR:
aly03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
9308846
Complex C
U5 SnRNP specific factors
9308846
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP6_TPR
PRP1_N
TPR_14
HAT_PRP39_N
Suf
TPR_19
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
TPR_2
CFAP70_TPR_C
TPR_17
TPR_CcmH_CycH
Y4kD_C
T4SS_LegC2C7
UBX
Motif
Other DBs
NCBI-GeneID:
9308846
NCBI-ProteinID:
XP_020876351
LinkDB
All DBs
Position
Unknown
AA seq
1018 aa
AA seq
DB search
MVFLSIPNGKTLSIDVNPKSTTVSAFEQLVHQRSHVPKPFLRYSLRMRNPSHVFVDSDSI
LLSDLGVSRFSTVIIHVPLLGGMQGMAPPKPRLDFLNSKPPSNYVAGLGRGATGFTTRSD
IGPARAAPDLPDRSAAATAAAPGVGRGAGKPSEAEDDEEAEEKRYDENQTFDEFEGNDVG
LFANAEYDEDDKEADAIWESIDQRMDSRRKDRREAKLKEEIEKYRASNPKITEQFADLKR
KLHTLSADEWDSIPEIGDYSLRNKKKKFESFVPIPDTLLEKAKKEKELVMALDPKSRAAG
GSETPWGQTPVTDLTAVGEGRGTVLSLKLDRLSDSVSGQTVVDPKGYLTDLKSMKRTTDE
EIYDRNRARLLYKSLTQSNPKNPNGWIAAARVEEMDGKIKAARLQIQRGCEECPKNEDVW
LEACRLANPEDAKGVIAKGVKLIPNSVKLWLEAAKLEHDEENKSRVLRKGLEHIPDSVRL
WKAVVELANEDDARILLHRAVECCPLHLELWVALARLETYSESKKVLNKAREKLPKEPAI
WITAAKLEEANGNTAMVGKIIDRGIKTLQREGVVIDRENWMNEAEASERAGSVATCQAII
KNTIGIGVEEEDRKRTWVADADECKKRGSIETARAIYAHALTVFLTKKSIWLKAAQLEKS
HGSRESLDALLRKAVTYVPQAEVLWLMGAKEKWLAGDVPAARAILQEAYAAIPNSEEIWL
AAFKLEFENKEPERARMLLAKARERGGTERVWMKSAIVERELGNVEEERRLLNEGLKQFP
TFFKLWLMLGQLEERFKHLEQARKAYDTGLKHCPHCIPLWLSLADLEEKVNGLNKARAIL
TTARKKNPGGAELWLAAIRAELRHDNKREAEHLMSKALQECPSSGILWAADIEMAPRPRR
KTKSMDAMKKCDRDPHVTVAVAKLFWQDKKVEKARSWFERAVTLGPDIGDFWALYYKFEL
QHGSDENRKEVVAKCVASEPKHGEKWQAISKAVENAHQPIEVILKRVVSALSKEENAA
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttctctcgatccccaacgggaagactctgtcgatcgacgtgaaccctaaatca
accaccgtctccgccttcgaacaattggtccaccaacgcagtcatgttccaaagcctttc
cttcgttactcgctccgtatgcgaaaccctagccatgtattcgtcgattccgattcgatt
ctattatccgatctcggtgtttctcgtttctctactgtgattatccatgtcccgcttttg
ggtggtatgcaaggaatggctccgccgaagcctcgtctcgatttcctcaattctaagcct
ccgtcaaattatgtagcgggtttgggtcgtggtgctactgggtttactactcggtcagat
attggtcctgctcgtgctgctccggatctgcctgatcgatctgctgcggctacagcggct
gctccaggagtaggtcgtggagcagggaagccaagtgaagcggaggacgatgaagaagct
gaggagaaaaggtacgatgagaatcagacgtttgatgagtttgaagggaatgatgttggt
ttgttcgctaatgctgagtacgatgaggatgacaaagaggctgatgccatctgggagtct
attgatcagaggatggattcgaggaggaaagatcggagagaagcgaagttgaaggaagaa
atcgagaaataccgagcctcgaaccctaagattactgagcagtttgcggatttgaagagg
aaattacacactttgtctgcggatgaatgggacagtattcctgagattggggattactcg
ctgcggaacaagaagaagaagtttgagagctttgtacctattcctgatacgcttttggag
aaggcgaagaaagaaaaggagcttgtcatggccttagacccaaagagcagagccgctggt
ggctcggagacaccatgggggcagacgccagtgacagatttgactgccgtaggtgaggga
agaggtacggtgttgtctctgaagcttgataggttatcagattcagtttcggggcaaact
gttgtggaccctaaaggctacttaactgacctgaagagtatgaaaagaaccactgatgaa
gagatatacgatcgcaacagagctagattgttatacaagagtttgactcagtcgaatcca
aagaatccaaatggctggattgctgctgctagagtggaggaaatggatgggaagattaaa
gcagctaggcttcagattcagaggggctgcgaagagtgcccgaaaaatgaggatgtttgg
cttgaagcttgtaggttagccaatccagaagatgccaagggggttattgcaaagggagtt
aagctgatacccaattcagtgaagctatggttggaagctgcaaagctggagcatgatgag
gagaacaagagtagggtgttgagaaagggactggaacatattccagactctgtaaggcta
tggaaggctgttgttgagttggctaatgaggatgatgcaaggattttgcttcacagggct
gtggagtgctgccctttgcatctggagctatgggtggcacttgcgaggctcgaaacatat
tctgaatcaaagaaggtgttgaataaagcgagagagaagctcccgaaggagcctgcgatt
tggatcaccgctgctaagttagaggaagctaatgggaacacagctatggtgggaaagatt
attgataggggtataaagactctgcagagagaaggggtcgttattgaccgagaaaattgg
atgaatgaggctgaggcctctgagagagctgggtctgtcgcaacatgccaggcgattatt
aagaacacaatcggtattggagtcgaagaagaggatagaaagagaacttgggttgctgat
gcagatgagtgcaagaagaggggttccattgagaccgcaagagcaatatacgcccatgct
cttactgtattcttgaccaagaaaagtatctggcttaaagcggcgcagcttgagaagagc
cacgggagtagggagtcccttgatgccttgttgcgtaaggcagtgacatatgtcccgcaa
gctgaggttctctggctcatgggtgcgaaagagaagtggcttgctggggatgttccagca
gcccgtgctattttacaagaggcttacgctgcaattcccaactctgaggaaatctggctt
gctgctttcaagctcgagtttgagaacaaggagccagagagggcgagaatgctgcttgca
aaagcaagggaaagaggagggactgagagggtctggatgaaatcagccattgttgagaga
gaacttggcaacgtagaggaggagaggagattgcttaatgaaggcttgaagcaattccca
acattcttcaagctttggttgatgcttgggcagctcgaggaacggttcaagcatttggaa
caggccaggaaagcttatgatactggtttgaagcactgtccccactgcataccgctgtgg
ctctcgctcgctgatcttgaagagaaagtgaatgggctgaacaaagctcgggctattctc
accacggccaggaagaagaatcctgggggggctgagctatggttagctgctattcgtgct
gaactgaggcatgacaacaagagagaagcagagcacttgatgtcaaaggctctgcaagag
tgtcccagtagtggtatcctctgggctgcggacatcgagatggcgccacgccctcgacgg
aaaacaaagagtatggatgctatgaagaagtgtgatcgcgaccctcatgtcaccgtagct
gttgcaaagctcttttggcaagacaagaaggtggagaaagccagatcatggtttgaacgt
gctgttacccttggcccagatattggcgatttctgggcgttgtactacaaatttgaactt
caacatggctctgatgagaacaggaaggaagttgtggcgaagtgtgtagctagtgagccg
aagcatggtgagaagtggcaagccatctccaaagcggttgagaatgctcaccagcctatt
gaagtcatcttgaagagagttgtgagtgcgttgagcaaggaagagaatgctgcttga
DBGET
integrated database retrieval system
